bioinfologics/w2rap-contigger
An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.
C++MIT
Issues
- 0
step2 crashed
#56 opened by yuzhenpeng - 6
Installation error
#45 opened by vtrinca - 0
help with compiling on Mac OS
#51 opened by devonorourke - 1
Segmentation fault in Step 5
#46 opened by theaidenlab - 1
More details on w2rap-contigger step 5 needed - run with 100bp PE short reads (Illumina)
#48 opened by wul88 - 2
No error message (34045 Aborted)
#49 opened by sarah872 - 1
Read lengths and large K
#44 opened by andreaswallberg - 1
- 1
Step 3 crash
#50 opened by mlcossette9224 - 2
fails to compile with gcc 7.2.0
#31 opened by wookietreiber - 3
Illegal involution value
#34 opened by sanjitsbatra - 7
Segfault during Step 6: removing small components
#43 opened by melop - 2
Dump final HBV, paths and GFAs consistently
#15 opened by bjclavijo - 1
errors when compiling with gcc-8 in MacOS
#41 opened by bjclavijo - 1
Consider enabling disk batches by default
#18 opened by bjclavijo - 2
hbv2gfa segmentation fault
#19 opened by ethering - 0
Update licensing information
#13 opened by bjclavijo - 1
- 7
Having trouble with preoccupied kmers
#39 opened by gitcruz - 0
Improve CLI log
#12 opened by bjclavijo - 0
Provide a minimum consistent set of options for PathFinder, and enable PathFinder by default
#14 opened by bjclavijo - 0
Review and clean up CLI options
#11 opened by bjclavijo - 4
- 9
Please tag a stable release
#6 opened by sjackman - 0
Rename output files to meaningful names
#16 opened by bjclavijo - 15
w2rap-contiger with 150bp pe library
#24 opened by StephanHolgerD - 16
Not enough memory
#27 opened by jcgrenier - 2
Terminate: quality score larger than 63
#23 opened by Timothy-WANG - 1
Step 3 crashed
#35 opened by yloemie - 9
- 5
K parameter determination
#36 opened by mictadlo - 1
denoising Illumina reads
#37 opened by mictadlo - 2
Resume checkpoints in w2rap-contigger?
#40 opened by mht85 - 3
incomplete record
#22 opened by jdmontenegro - 0
- 3
Step 1 Speed for w2rap contigger
#33 opened by sanjitsbatra - 2
Speeding up loading reads into memory
#32 opened by sanjitsbatra - 0
add `make install` target
#29 opened by wookietreiber - 1
Make error: omp_get_proc_bind
#28 opened by sanjitsbatra - 11
Some trouble with CP_MAX_QDIFF value !
#5 opened by Arno75 - 3
- 2
Fails to build with clang on Mac OS
#7 opened by sjackman - 4
cannot find -llib
#4 opened by stsmall - 1
Missing licensing information
#1 opened by mr-c