lowe-lab-ucl/arboretum

Issues

• Improve lineage tree layout for conditions where multiple children arise from a division event.

  #107 opened 3 months ago by lupinthief
  2

• Fusion events

  #105 opened a year ago by akas0018
  1

• Plugin documentation

  #102 opened a year ago by marabuuu
  1

• Make a new video for the README/hub

  #97 opened a year ago by quantumjot
  0

• Merges do not work properly

  #10 opened a year ago by quantumjot
  0

• lineage tree ignores multiple parents

  #91 opened a year ago by will-moore
  7

• Code coverage report looks incorrect

  #100 opened 2 years ago by quantumjot
  0

• Change name of napari hub item to `arboretum` not `napari-arboretum`

  #96 opened 2 years ago by paddyroddy
  1

• Save Tree feature and Nodes labeling

  #81 opened 2 years ago by Ciro1990
  3

• Export arboretum tree figure and file name properties

  #51 opened 2 years ago by dpshelio
  1

• track properties requirements

  #90 opened 2 years ago by quantumjot
  0

• rename `.napari` to `.napari-hub`

  #59 opened 2 years ago by quantumjot
  0

• Remove `setup.cfg` in favour of `pyproject.toml`

  #88 opened 2 years ago by paddyroddy
  0

• Test project board attempt 3

  #87 opened 2 years ago by paddyroddy
  0

• Test project board again

  #86 opened 2 years ago by paddyroddy
  0

• Test project board works

  #85 opened 2 years ago by paddyroddy
  0

• Long arboretum use crashes the kernel

  #76 opened 2 years ago by KristinaUlicna
  1

• Import dependencies

  #79 opened 2 years ago by goanpeca
  2

• Error drawing tree for id#21 in example data

  #68 opened 2 years ago by dstansby
  2

• Lineage Tree Annotation Offset

  #75 opened 2 years ago by KristinaUlicna
  3

• Improve performance with larger trees

  #16 opened 2 years ago by quantumjot
  9

• Distinguish between mouse click, drag and other events

  #63 opened 2 years ago by quantumjot
  1

• Vertical time line disappears on second cell selection

  #73 opened 2 years ago by dstansby
  0

• Sometimes the track ID isn't showing

  #44 opened 2 years ago by dstansby
  1

• Leaf ID labels have low contrast

  #47 opened 2 years ago by dstansby
  0

• Add title to tree visualisation

  #61 opened 2 years ago by dstansby
  0

• Make it obvious which cell is selected in main napari window

  #62 opened 2 years ago by dstansby
  1

• Add y-axis

  #46 opened 2 years ago by dstansby
  0

• display a helpful message in the plugin to tell the user how to interact

  #21 opened 3 years ago by quantumjot
  0

• Add tooltip box to trees

  #27 opened 3 years ago by dstansby
  1

• Make clicking on tree jump to relevant cell+time in main window

  #50 opened 2 years ago by dstansby
  0

• Add more than one branch to the property plotter

  #66 opened 2 years ago by dstansby
  0

• Make 1D property plotter colours match tree colours

  #65 opened 2 years ago by dstansby
  0

• Rename `master` branch to `main`

  #54 opened 2 years ago by dstansby
  3

• Add horizontal line at current time step

  #48 opened 2 years ago by dstansby
  0

• test interactive TrackManager with arboretum

  #22 opened 2 years ago by quantumjot
  3

• Tree colours don't change when colourmap changed

  #49 opened 2 years ago by dstansby
  0

• Relabel tracks feature

  #57 opened 2 years ago by nthndy
  1

• Redocking the arboretum widget can mess with tree?

  #52 opened 2 years ago by alessandrofelder
  0

• Make widget fill the full widget window

  #45 opened 2 years ago by dstansby
  0

• Make colour vary along tree branches

  #29 opened 2 years ago by dstansby
  0

• Changing the plotting backend

  #34 opened 2 years ago by dstansby
  3

• update README with a gif of how to use arboretum

  #20 opened 2 years ago by quantumjot
  0

• testing script

  #30 opened 3 years ago by alessandrofelder
  0

• display track even if it is not part of a tree

  #24 opened 3 years ago by quantumjot
  0

• migrate to using npe2

  #17 opened 3 years ago by quantumjot
  0

• Write "how to use" guide

  #23 opened 3 years ago by dpshelio
  0

• Move repo to lowe-lab-ucl organization

  #15 opened 3 years ago by quantumjot
  1

• Tree search is slow for large trees

  #11 opened 3 years ago by quantumjot
  0

• Cursor position is returned in world coordinates rather than data coordinates

  #12 opened 3 years ago by quantumjot
  0