mairenileath

mairenileath's Stars

• theislab/single-cell-tutorial

  Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

  Language:Jupyter Notebook1.3k45101444

• hbctraining/scRNA-seq

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• davidsjoberg/ggbump

  A geom for ggplot to create bump plots

  Language:R513122232

• saeyslab/nichenetr

  NicheNet: predict active ligand-target links between interacting cells

  Language:R45215266113

• luntergroup/octopus

  Bayesian haplotype-based mutation calling

  Language:C++2991926537

• crazyhottommy/The-world-of-faculty

  resources for faculty

  20710026

• pachterlab/kallistobustools

  kallisto | bustools workflow for pre-processing single-cell RNA-seq data

  114184930

• GreenleafLab/10x-scATAC-2019

  Publication Page for Satpathy*, Granja* et al 2019

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• 10XGenomics/single-cell-3prime-paper

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• Wedge-lab/battenberg

  Battenberg R package for subclonal copynumber estimation

  Language:R75179544

• sansomlab/tenx

  Pipelines for the analysis of 10x single-cell RNA-sequencing data

  Language:R5681816

• mskilab-org/JaBbA

  MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.

  Language:R50124625

• bedapub/besca

  BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis

  Language:Python481011216

• mskilab-org/fishHook

  R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after correcting for genomic covariates.

  Language:R2711169

• saezlab/FootprintMethods_on_scRNAseq

  Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data

  Language:R26308

• effiken/martin_et_al_cell_2019

  Scripts and data files used to generate the figures of the Crohn's single-cell RNA-seq paper "Single-cell analysis of Crohn’s disease lesions identifies a pathogenic cellular module associated with resistance to anti-TNF therapy"

  Language:R20246

• satijalab/Integration2019

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• haniffalab/HCA_skin

  HCA data analysis

  Language:Jupyter Notebook11113

• JiaruiMi/SingleCell_template

  single cell RNA-seq analysis template based on online resources

  Language:R101

• huqingtao2018/B-cells-scRNAseq-in-BC

  8105

• lujonathanh/coffdrop

  Comprehensive toolkit for mutual exclusivity and co-occurrence analysis of cancer mutations.

  Language:Jupyter Notebook31

• lujonathanh/mutex

  A package for finding mutually exclusive and co-occurring pairs and triplets of mutations.

  Language:Jupyter Notebook30

• yejg2017/Bio-10X

  Use Seurat,monocle etc in R to analysis 10X single cell dataset

  Language:R3100

• matsen/teaching

  My teaching materials.

  Language:HTML2201

• wvictor14/placental-villous-explants-scRNAseq

  analysis on public scRNAseq data

  Language:HTML21

• dancooke/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

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• haruosuz/microbe

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