mlangill

mlangill's Stars

• stascorp/rdpwrap

  RDP Wrapper Library

  Language:Pascal14.8k4952.7k3.9k

• OpenRefine/OpenRefine

  OpenRefine is a free, open source power tool for working with messy data and improving it

  Language:Java11k4733.1k2k

• andreafabrizi/Dropbox-Uploader

  Dropbox Uploader is a BASH script which can be used to upload, download, list or delete files from Dropbox, an online file sharing, synchronization and backup service.

  Language:Shell6.6k2734531.1k

• derekantrican/GAS-ICS-Sync

  A Google Apps Script for syncing ICS/ICAL files faster than the current Google Calendar speed

  Language:JavaScript1.6k31280199

• bbuchfink/diamond

  Accelerated BLAST compatible local sequence aligner.

  Language:C++1.1k38703181

• joey711/phyloseq

  phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

  Language:R587541.6k187

• jts/nanopolish

  Signal-level algorithms for MinION data

  Language:C++571361k159

• sortmerna/sortmerna

  SortMeRNA: next-generation sequence filtering and alignment tool

  Language:C++2481531668

• DerrickWood/kraken

  Kraken taxonomic sequence classification system

  Language:C++21527136103

• jessieren/VirFinder

  VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data

  Language:R13462823

• donovan-h-parks/STAMP

  Statistical Analysis of Metagenomic Profiles

  Language:Python91134335

• picrust/picrust

  Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tests

  Language:Python901912339

• MadsAlbertsen/multi-metagenome

  Scripts and tutorials on how to assemble individual microbial genomes from metagenomes

  Language:Perl80162744

• joey711/shiny-phyloseq

  An interactive web application for demonstrating and using phyloseq.

  Language:HTML6058245

• preston/bittorious

  An open source BitTorrent tracker and user management portal, supporting automatic RSS feed generation, role-based management, and real-time network monitoring.

  Language:HTML55756

• biocore/emperor

  Emperor a tool for the analysis and visualization of large microbial ecology datasets

  Language:JavaScript521135850

• MG-RAST/MG-RAST

  The MG-RAST Backend -- the API server

  Language:Perl45111228

• jts/nanocorrect

  Experimental pipeline for correcting nanopore reads

  Language:Jupyter Notebook39141310

• ctSkennerton/crass

  The CRISPR assembler

  Language:C++35610011

• ggloor/CoDaSeq

  Functions for compositional analysis of high throughput sequencing

  Language:R297312

• beiko-lab/gengis

  GenGIS (pronounced 'Genghis' like Genghis Khan) is a bioinformatics application that allows users to combine digital map data with information about biological sequences collected from the environment. GenGIS provides a 3D graphical interface in which the user can navigate and explore the data, as well as a Python interface that allows easy scripting of statistical analyses using the Rpy libraries.

  Language:C++27165413

• gavinmdouglas/POMS

  Phylogenetic Organization of Metagenomic Signals (POMS)

  Language:R19410

• EBI-Metagenomics/ebi-metagenomics

  Automatically exported from code.google.com/p/ebi-metagenomics

  Language:Java11945

• slindgreen/metabenchmark

  Repository for benchmark of metagenome tools

  7222

• neufeld/SSUnique

  SSUnique is a software tool designed to process unclassified and/ or rare fractions of SSU rRNA gene sequence libraries. Specifically, SSUnique generates a network- based visualization of taxonomic assignments then extracts unclassified and/or rare sequence groups, filtering these groups for phylogenetic novelty.

  Language:R6701

• alifar76/MicrobeNets

  A simple wrapper around glmnet package in R for microbiome data

  Language:R4201

• alifar76/PHoP

  PHoP (PICRUSt Heatmaps of PhyloChip data) v0.1.2

  Language:Python2300

• germs-lab/metagenomics-training-hackathon

  Language:Python21201

• lairdm/islandviewer

  Perl library to run the IslandViwer backend

  Language:Perl2102

• lairdm/islandviewer-ui

  Web UI for Islandviewer

  Language:JavaScript1203