monarch-initiative/monarch-legacy

Issues

• Understanding Equivalent Ids between Monarch & EBI OLS version of records

  #1632 opened 5 years ago by larrybabb
  11

• Model spotlight is missing taxon

  #1653 opened 5 years ago by nicolevasilevsky
  2

• Phenotype page: Display co-occurring phenotypes.

  #1538 opened 7 years ago by jmcmurry
  24

• add Genetics Home Reference

  #1588 opened 6 years ago by nicolevasilevsky
  2

• User feedback mechanisms in app

  #1603 opened 6 years ago by mbrush
  2

• Mark this repo as deprecated

  #1650 opened 5 years ago by nlharris
  3

• FlyBase data in variant tables often show ".well-known/genid/"-type entries

  #1598 opened 5 years ago by sjm41
  1

• Add OSU to website footer?

  #1620 opened 5 years ago by nlharris
  1

• Update data sources and/or data sources web page

  #1621 opened 5 years ago by nlharris
  1

• Monarch website strangely slow to load

  #1630 opened 5 years ago by nlharris
  1

• link to layperson blog post links to old blog site

  #1648 opened 5 years ago by nicolevasilevsky
  5

• Update Monarch API information on production website

  #1643 opened 5 years ago by monicacecilia
  2

• Downloading Monarch data

  #1644 opened 5 years ago by rgb4268
  4

• monarch team page is out of date

  #1641 opened 5 years ago by nicolevasilevsky
  4

• Better representation of causal genes versus modifier genes

  #1613 opened 5 years ago by jmcmurry
  1

• SLC7A13 constraint data mismatch

  #1574 opened 5 years ago by vgainullin
  2

• Use consistent capitalization for categories

  #1638 opened 5 years ago by balhoff
  3

• GDR mismatch

  #1591 opened 5 years ago by vgainullin
  4

• Phenotype analysis returns an empty hit table

  #1642 opened 6 years ago by northwestwitch
  1

• Disease sorting and labeling

  #1639 opened 6 years ago by pnrobinson
  0

• Consider displaying or documenting more detail about association sources

  #1604 opened 6 years ago by mbrush
  9

• lack of concordance between data archive and monarch-app

  #1634 opened 6 years ago by jmcmurry
  1

• high level fly phenotype terms showing up on pages

  #1633 opened 6 years ago by jmcmurry
  0

• incorrect phenotype associated with 'psoriasis'

  #1631 opened 6 years ago by nicolevasilevsky
  1

• Consider a query builder

  #1629 opened 6 years ago by mellybelly
  0

• misalignment of counts on disease page for genes

  #1628 opened 6 years ago by mellybelly
  4

• "disease" mapping between DO and MONDO

  #1569 opened 6 years ago by larrybabb
  2

• Add link-outs on our end - Main ticket

  #1563 opened 6 years ago by lwinfree
  2

• Phenotype coverage assessment tool (Survey validation service)

  #1615 opened 6 years ago by jmcmurry
  0

• zebrafish genomic data seems to be off

  #1605 opened 6 years ago by nathandunn
  4

• FlyBase genotype data showing with html <up> tags instead of superscripts

  #1599 opened 6 years ago by sjm41
  2

• Some MGI variant/allele symbols incomplete

  #1601 opened 6 years ago by cindyJax
  1

• update news and events on monarch site

  #1584 opened 6 years ago by nicolevasilevsky
  5

• FAQ: Get list of candidate genes from patient's composite phenotypes

  #1581 opened 6 years ago by lwinfree
  0

• Missing definitions on some disease pages

  #1561 opened 6 years ago by kshefchek
  1

• Monarch's perspective on Pediatric Cancer and WHO's Cancer terms

  #1567 opened 6 years ago by larrybabb
  5

• Phenogrid 'Access-Control-Allow-Origin' error

  #1565 opened 6 years ago by tkonopka
  4

• Add links to VarSome

  #1526 opened 6 years ago by lwinfree
  2

• case insensitive identifier prefix retrieval

  #1562 opened 6 years ago by TomConlin
  1

• When a non-MONDO ID is used for disease page, it assumes it's a leaf node disease

  #1542 opened 6 years ago by cmungall
  1

• ClinVar submissions using MONDO Ids?

  #1551 opened 6 years ago by larrybabb
  2

• Gene pages says no phenotypes to compare even when phenotypes present

  #1555 opened 6 years ago by cmungall
  2

• NCIt and Oncotree

  #1550 opened 6 years ago by larrybabb
  3

• Class info page should show axiom annotations, synonym types etc

  #1548 opened 7 years ago by cmungall
  0

• Redirect IDs to clique leader

  #1530 opened 7 years ago by kshefchek
  4

• Cluster viz: For a given phenotype visualize disease-gene clusters

  #1539 opened 7 years ago by jmcmurry
  0

• Nice to have: resources aimed at patients and families impacted by a particular disease

  #1537 opened 7 years ago by nicolevasilevsky
  0

• Some disease description text has strange references embedded

  #1535 opened 7 years ago by jmcmurry
  1

• Reactome link update

  #1533 opened 7 years ago by TomConlin
  2

• Potential scigraph issues with latest release

  #1529 opened 7 years ago by cmungall
  4