neely

neely's Stars

• hakimel/reveal.js

  The HTML Presentation Framework

  Language:JavaScript68.2k1.7k2.4k16.7k

• learnbyexample/Command-line-text-processing

  :zap: From finding text to search and replace, from sorting to beautifying text and more :art:

  Language:Shell10.2k27716711

• sfu-db/dataprep

  Open-source low code data preparation library in python. Collect, clean and visualization your data in python with a few lines of code.

  Language:Python2.1k27416206

• mtheall/ftpd

  FTP Server for 3DS/Switch

  Language:C++1.4k67149134

• pachterlab/gget

  🧬 gget enables efficient querying of genomic reference databases

  Language:Python960107175

• lh3/bioawk

  BWK awk modified for biological data

  Language:C5963635119

• lazear/sage

  Proteomics search & quantification so fast that it feels like magic

  Language:Rust2321510046

• nf-core/mag

  Assembly and binning of metagenomes

  Language:Nextflow223161306113

• Noble-Lab/casanovo

  De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

  Language:Python119724440

• greenelab/covid19-review

  A collaborative review of the emerging COVID-19 literature. Join the chat here:

  Language:TeX1171346081

• jpquast/protti

  Picotti lab data analysis package.

  Language:R614554

• fgcz/rawrr

  Access Orbitrap data in R lang using C# .NET assembly - bioconductor package

  Language:R568709

• HUPO-PSI/psi-ms-CV

  HUPO-PSI mass spectrometry CV

  Language:Python282012338

• Arcadia-Science/2023-nr-clustering

  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.

  Language:Python23452

• roylelab/manuscript-templates

  LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.

  Language:TeX20202

• bigbio/pmultiqc

  A library for QC report based on MultiQC framework

  Language:Python1410509

• mpc-bioinformatics/ProtGraph

  ProtGraph - A Graph-Generator for Proteins

  Language:Python116415

• Noble-Lab/Pepper

  Peptide coefficient predictor

  Language:Jupyter Notebook9242

• mariechion/mi4p

  Multiple Imputation for Proteomics

  Language:R6201

• MannLabs/Quality-Control-of-the-Plasma-Proteome

  Language:Python5204

• wombat-p/MaxQuant-Workflow

  Language:Roff5302

• 524D/compareMS2

  Compare samples by MS2 spectra

  Language:JavaScript42571

• YonghuiDong/RawHummus

  QC Check Tool for Metabolomics

  Language:R4241

• Center-for-Proteomics-and-Metabolomics/MSQC

  Quality Control of Mass Spectrometry Data

  2

• jspaezp/sagegui

  Language:Rust20

• IGARDS/qc-benchmarker

  Language:HTML10

• jgmeyerucsd/proteomics-tutorial

  Language:HTML1002

• ryip10903/TeaProt

  Language:R1

• wombat-p/Compomics-Workflow

  Language:HTML1312

• wombat-p/OpenMS-ProteomicsLFQ

  Language:HTML1231