nico-chung

nico-chung's Stars

• saubury/posture-watch

  Encourage good ergonomic by using laptop camera to watch posture

  Language:Python231

• guidance-ai/guidance

  A guidance language for controlling large language models.

  Language:Jupyter Notebook19.3k1.1k

• bionlproc/BERT-CRel-Embeddings

  BMET: Improved Biomedical Word Embeddings

  41

• awslabs/amazon-s3-tar-tool

  A utility tool to create a tarball of existing objects in Amazon S3

  Language:Go17513

• oegedijk/explainerdashboard

  Quickly build Explainable AI dashboards that show the inner workings of so-called "blackbox" machine learning models.

  Language:Python2.3k333

• genid/de-goulash

  Genetic deconvolution of barcoded single cell RNA-seq

  Language:C8

• nico-chung/affiliation_parser

  Simple python parser for MEDLINE, Pubmed OA affiliation string

  1

• Boehringer-Ingelheim/deep-learning-based-quantification-of-NAFLD-NASH

  Automated liver NAFLD/NASH scoring

  Language:Jupyter Notebook96

• melaniedavila/cellranger-aws-pipeline

  A cloud-based deployment of the 10x Genomics Cell Ranger software

  Language:Python133

• yutannihilation/gghighlight

  Highlight points and lines in ggplot2

  Language:R52423

• FEI38750/MTD

  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data

  Language:R168

• davidliwei/awesome-CRISPR

  List of software/websites/databases/other stuff for genome engineering

  505110

• LaraSellesVidal/ncRNAtools

  Language:R12

• mikelove/awesome-multi-omics

  List of software packages for multi-omics analysis

  743164

• kanaverse/kana

  Single cell analysis in the browser

  Language:JavaScript14212

• mdozmorov/scRNA-seq_notes

  A list of scRNA-seq analysis tools

  Language:R645149

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3.3k995

• crazyhottommy/RNA-seq-analysis

  RNAseq analysis notes from Ming Tang

  Language:Python952300

• crazyhottommy/scRNAseq-analysis-notes

  scRNAseq analysis notes from Ming Tang

  660162

• j-andrews7/iBET

  interactive Bioinformatics Exploratory Tools

  Language:R5

• bixBeta/DESeq2-shiny

  A shiny application to perform differential gene expression analysis of count data using DESeq2. The app also allows unsupervised exploration of data using PCA and hierarchical clustering.

  Language:R43

• cmdcolin/awesome-genome-visualization

  A list of interesting genome browser and genome visualization programs

  Language:TypeScript879112

• dzhang32/ggtranscript

  Visualizing transcript structure and annotation using ggplot2

  Language:R1339

• euxhenh/cellar

  Interactive software tool for the assignment of cell types in single-cell studies.

  Language:Python325

• BaderLab/HumanLiver

  R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations

  Language:R2711

• chanwkimlab/MarcoPolo

  MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-seq data

  Language:Python202

• datapplab/AutoClass

  Language:Jupyter Notebook422

• danielecook/Awesome-Bioinformatics

  A curated list of awesome Bioinformatics libraries and software.

  3.2k621

• dcdanko/MD2

  MicrobeDirectory 2.0

  Language:Jupyter Notebook223

• shenlab-sinai/ngsplot

  Quick mining and visualization of NGS data by integrating genomic databases

  Language:R26165