niemasd/TreeSwift

Issues

• Bug in distance_between function

  #34 opened 2 months ago by shayesteh99
  2

• Create Tree.get_node() function

  #33 opened 10 months ago by niemasd
  2

• Node params relevant to branch lost in subtree after pruning because internal node is deleted

  #32 opened 10 months ago by pekarj
  5

• node order in the preorder traversal

  #30 opened a year ago by shayesteh99
  1

• Add write_tree_nexus function

  #29 opened 2 years ago by niemasd
  1

• Travis CI expired

  #28 opened 2 years ago by niemasd
  1

• Parsing Error - Unescaped Characters

  #27 opened 2 years ago by valevalorin
  6

• .deroot() behavior

  #20 opened 2 years ago by balabanmetin
  5

• Rerooting error

  #24 opened 2 years ago by smirarab
  2

• parsing nexus files with ancestral state reconstruction

  #23 opened 3 years ago by pekarj
  10

• Parsing nexus file

  #22 opened 3 years ago by pekarj
  18

• Preorder traversal order

  #21 opened 3 years ago by theosanderson
  5

• `contract_low_support` can contract leaf nodes

  #18 opened 4 years ago by RuneBlaze
  1

• tree.diameter() does not take single branch into consideration

  #14 opened 4 years ago by YaosenLin
  1

• traverse_rootdistorder(): unsupported operand type

  #12 opened 4 years ago by mahermassoud
  1

• AttributeError: 'NoneType' object has no attribute 'edge_length'

  #17 opened 4 years ago by alffdtu
  1

• Reading in mutations

  #16 opened 4 years ago by pekarj
  3

• Failed reading nexus file

  #9 opened 5 years ago by pekarj
  3

• Minor: unclosed files triggering ResourceWarnings

  #8 opened 6 years ago by bede
  5

• Feature request: deroot

  #7 opened 6 years ago by bede
  3

• Add ability to ladderize trees

  #5 opened 7 years ago by niemasd
  3

• Add ability to extract a subtree rooted at a given tree

  #6 opened 7 years ago by niemasd
  1

• Make recursive traversals iterative

  #4 opened 7 years ago by niemasd
  1

• Add ability to reroot trees

  #2 opened 7 years ago by niemasd
  1

• Add ability to write trees to file

  #3 opened 7 years ago by niemasd
  1

• Add ability to load trees in different formats

  #1 opened 7 years ago by niemasd
  4