niksirbi
Neuroscientist and Research Software Engineer developing free, Open Source tools for studying brains and the behaviours they produce.
Sainsbury Wellcome CentreLondon, United Kingdom
Pinned Repositories
brainglobe-template-builder
Build unbiased anatomical templates from individual images
course-behavioural-analysis
Materials and slides for the video-based analysis of animal behaviour course.
movement
A Python toolbox for analysing body movements across space and time
NeuroBlueprint
Lightweight data specification for systems neuroscience, inspired by BIDS.
brain4views
Plotting 4 brain surface views on a single matplotlib figure
MyWebsite
The source files for my personal website
napari
napari: a fast, interactive, multi-dimensional image viewer for python
niksirbi.github.io
Experimental personal website made with quarto
pcarpet
Create a carpet plot from fMRI data and decompose it with PCA
prime-re.github.io
Open resource exchange platform for non-human primate neuroimaging
niksirbi's Repositories
niksirbi/brain4views
Plotting 4 brain surface views on a single matplotlib figure
niksirbi/MyWebsite
The source files for my personal website
niksirbi/pcarpet
Create a carpet plot from fMRI data and decompose it with PCA
niksirbi/napari
napari: a fast, interactive, multi-dimensional image viewer for python
niksirbi/niksirbi.github.io
Experimental personal website made with quarto
niksirbi/PyRat_fMRI
A GUI app made with python's tkinter for quickly computing fMRI activation maps
niksirbi/rebootcamp
Tracking my AI/ML learning experience during the SWC ReBootcamp 2023
niksirbi/datadrivencv
R package for building customizable CVs from spreadsheets
niksirbi/diataxis-slides
Slides on diataxis
niksirbi/MLplayground
My personal playground for learning about Machine Learning
niksirbi/niksirbi
My personal GitHub profile README
niksirbi/optimized_antsMultivariateTemplateConstruction
A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
niksirbi/RatInABox
A python package for simulating motion in continuous environments and spatial cell types (e.g. place cell).
niksirbi/rse-best-practices-playground
niksirbi/rse-best-practices-playground-trial
niksirbi/RustLearning
In this repo I track my coding exercises for learning Rust, as I follow The Rust Book.
niksirbi/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
niksirbi/statistical-rethinking-2023
Python implementation of Richard McElreath's Statistical Rethinking 2023 lecture series on causal inference & Bayesian estimation.