owlcollab/owltools

Issues

• Parse error using .obo URLs

  #302 opened 4 months ago by kimrutherford
  18

• Problem updating to OWLAPI 4.5.16

  #298 opened 4 months ago by balhoff
  1

• Server in test no longer available

  #326 opened 4 months ago by balhoff
  2

• build.sh fails because Maven now requires HTTPS to be used instead of HTTP

  #315 opened 4 years ago by alexhenrie
  13

• GAF 2.2 relations are not properly emitted during GOlr loading

  #312 opened 4 years ago by kltm
  0

• Build of 2020-04-06 release source fail

  #307 opened 4 years ago by jelmd
  2

• Unstable output for owltools --save-closure-for-chado

  #256 opened 7 years ago by kimrutherford
  8

• Correct label and biological process issues for model annotation loader, possible other improvements

  #253 opened 7 years ago by kltm
  16

• Download error from "Install OWLTools" wiki page

  #301 opened 5 years ago by kimrutherford
  1

• Remove role GCIs from biochebi output

  #287 opened 5 years ago by balhoff
  5

• SecurityException running owltools

  #300 opened 5 years ago by balhoff
  0

• mvn build from source fails for OWLTools-Core

  #290 opened 5 years ago by wdduncan
  4

• Update obographs JSON dependency

  #292 opened 5 years ago by balhoff
  0

• Possible memory leak on 2020-04-06 version of owltools

  #294 opened 5 years ago by kshefchek
  8

• Getting 500 error

  #293 opened 5 years ago by callahantiff
  2

• Add or confirm support for GAF 2.2 to owltools

  #291 opened 5 years ago by kltm
  0

• New Release

  #288 opened 5 years ago by dougli1sqrd
  14

• Feature request: Need simple IC score generation

  #289 opened 5 years ago by matentzn
  0

• Conversion from OBO to OWL Functional creates invalid IRIs

  #286 opened 5 years ago by althonos
  0

• Using make-species-subset command to extract plant specific terms from go-plus.owl

  #283 opened 6 years ago by wkpalan
  9

• Help required: Nullpointer in TableToAxiomConverter

  #284 opened 6 years ago by matentzn
  2

• ClassCastException / crash when running --make-species-subset

  #262 opened 6 years ago by kimrutherford
  7

• owltools.script looks to have a typo in it

  #280 opened 6 years ago by saramsey
  0

• Hard-coded URLs (e.g. GO.xrf_abbs) affected by root domain change

  #276 opened 6 years ago by kltm
  11

• Error: owltools.cli.CommandLineInterface

  #277 opened 6 years ago by pbuttigieg
  12

• Current master build tests fail (commit a69a05a3002c444dc8625c704d936b52a23e47b6)

  #270 opened 6 years ago by RichardBruskiewich
  1

• Add relations to BioChebiGenerator

  #271 opened 6 years ago by balhoff
  0

• Duplicated entries after map2slim

  #272 opened 6 years ago by KristinaGagalova
  0

• Migrate owltools dependencies from code.berkeleybop.org to GitHub

  #269 opened 6 years ago by kltm
  0

• map2slim memory requirements

  #263 opened 6 years ago by emrobe
  0

• Error in using OWLTools-Core maven dependency

  #261 opened 6 years ago by marwa811
  0

• Add GO term created_by and creation_date into loader for GOlr

  #257 opened 7 years ago by kltm
  4

• Exception running owltools --make-species-subset

  #260 opened 7 years ago by kimrutherford
  1

• Error when convert

  #255 opened 7 years ago by ypriverol
  0

• getIdentifier should work with non-obolibrary PURLs (required for solr loading)

  #245 opened 7 years ago by cmungall
  6

• refactor identifiers to use CurieUtil

  #252 opened 7 years ago by cmungall
  0

• Fail to extract terms from IAO and ENVO

  #248 opened 7 years ago by bjonnh
  2

• Converting gaf/gpad to ttl(owl) format

  #244 opened 7 years ago by cybersiddhu
  3

• Extend solr loader to populate new closure fields

  #243 opened 7 years ago by cmungall
  2

• Add code to populate regulates-strict closure

  #241 opened 7 years ago by cmungall
  0

• SolrCommandRunner should skip models that are unsatisfiable

  #234 opened 7 years ago by kltm
  6

• Should TableRenderer include properties?

  #229 opened 7 years ago by balhoff
  5

• Ensure owltools produces correct aspect when generating predicted GAFs

  #237 opened 7 years ago by cmungall
  2

• GAF inference are incomplete because of incorrect mapping for part_of

  #238 opened 7 years ago by cmungall
  5

• Command --solr-load-models unecessarily fails when there is no provided "lego" catalog

  #232 opened 7 years ago by kltm
  4

• new command: copy-axiom (rewrite source axioms in terms of target, check for incoherency)

  #230 opened 7 years ago by cmungall
  0

• Add prefix definition

  #228 opened 7 years ago by stuppie
  2

• testOutdatedIEAs is itself outdated

  #226 opened 7 years ago by cmungall
  0

• owltools should (usually) fail and die if any commands cannot complete (Solr loader)

  #223 opened 7 years ago by kltm
  0

• Compiling fails

  #221 opened 7 years ago by eugenk
  0