paupaiz's Stars
afshinea/stanford-cs-229-machine-learning
VIP cheatsheets for Stanford's CS 229 Machine Learning
google-deepmind/deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
deepchem/deepchem
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
rmcelreath/stat_rethinking_2023
Statistical Rethinking Course for Jan-Mar 2023
hussius/deeplearning-biology
A list of deep learning implementations in biology
scverse/scanpy
Single-cell analysis in Python. Scales to >1M cells.
nayafia/microgrants
A list of microgrant programs for your good ideas
probml/pml2-book
Probabilistic Machine Learning: Advanced Topics
dado3212/spaces-renamer
💻 Ability to rename desktop spaces on macOS 10.10+
snap-stanford/pretrain-gnns
Strategies for Pre-training Graph Neural Networks
pachterlab/gget
🧬 gget enables efficient querying of genomic reference databases
GreenleafLab/ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
thelovelab/DESeq2
Differential expression of RNA-seq data using the Negative Binomial
philippbayer/Things-a-scientist-is-suppposed-to-know
A comprehensive and long list of things a modern scientist is supposed to know
dylkot/cNMF
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
davidaknowles/leafcutter
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
latchbio/latch
a python bioinformatics framework
colomemaria/epiScanpy
Episcanpy: Epigenomics Single Cell Analysis in Python
livnatje/DIALOGUE
DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map the cell transcriptome as a function of its environment.
1edv/evolution
This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'
laminlabs/nbproject
Light-weight Jupyter notebook tracker.
slinderman/stats305c
STATS305C: Applied Statistics III (Spring, 2023)
cosyne2024-sos/awesome-vision-neuroscience
A curated collection of resources and research on vision neuroscience 👁️ 🧠
lmurrow/DECIPHER-seq
Data and code to reproduce results from DECIPHER-seq paper
tidyomics/tidy-ranges-tutorial
Benioff-Center-for-Microbiome-Medicine/BCMMCommunity-OMICSPipelines
All about multi-omics pipelines developed by BCMM Community members
luisdiaz1997/SpatialFactorization
Pytorch implementation of Non Negative Spatial Factorization
pascalnotin/ProteinGym
Official repository for the ProteinGym benchmarks
paupaiz/ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
paupaiz/DECIPHER-seq
Data and code to reproduce results from DECIPHER-seq paper