livnatje/DIALOGUE

Issues

• Confounders, cellQ

  #47 opened 3 months ago by soniyalama
  0

• Trouble running DIALOGUE Example

  #43 opened 4 months ago by axelalmet
  12

• Could you provide historical versions?

  #46 opened 4 months ago by Tianran1998
  0

• Share the code for the figures published in the NBT

  #38 opened 4 months ago by xiangrong7
  3

• Issue with t() for sparse tpm matrices

  #44 opened 4 months ago by SabrinaRichter
  2

• colnames for X required, but was not clear to me

  #45 opened 4 months ago by SabrinaRichter
  0

• How to validate the MCPs expression

  #32 opened a year ago by Xxhongs
  5

• Code for putative cell–cell interactions mediated by ligand–receptor binding

  #42 opened 9 months ago by rseurinc
  0

• incorrect number of dimensions

  #40 opened a year ago by wangwl
  0

• The link 'See the tutorial for more details' does not lead to tutorials

  #39 opened a year ago by yao50985098
  3

• Error in DIALOGUE1(rA = rA, k = k, main = main, results.dir = results.dir, : Cannot run DIALOGUE with less than 5 samples.

  #37 opened a year ago by bmill3r
  0

• Definitions for arguments in `DIALOGUE.run`

  #36 opened a year ago by bmill3r
  0

• Example code to reproduce results of spatial dataset analyses

  #34 opened a year ago by bmill3r
  3

• average.mat.rows: Error in laply(ids.u, function(x) { : could not find function "laply"

  #35 opened a year ago by bmill3r
  4

• scRNA data cell number limit

  #30 opened a year ago by zhangqi234
  2

• Issues in anova step

  #33 opened a year ago by russellkune
  0

• Trouble finishing MCP analysis with Seurat input

  #28 opened a year ago by VNurm
  3

• selection of sparse canonical variates (w_1, ..., w_N)

  #29 opened 2 years ago by yugeji
  5

• Impossible to reproduce the code

  #31 opened a year ago by elissonlopes
  5

• Nanostring SMI analysis in the paper

  #23 opened a year ago by ptdtan
  3

• Warning Messages during run

  #26 opened 2 years ago by pakiessling
  2

• Interfacing with Seurat

  #11 opened 2 years ago by learning-MD
  4

• Input data format

  #12 opened 2 years ago by bwang1324
  13

• Tutorial Example Issue: Error in beanplot : could not find function "beanplot"

  #27 opened 2 years ago by 98xy
  2

• 10X scRNA-seq in DIALOGUE

  #15 opened 2 years ago by zhangch365
  8

• make.cell.type: "long vectors not supported yet" error

  #25 opened 2 years ago by pakiessling
  1

• MCP don't have gene

  #19 opened 2 years ago by jisnoalia
  4

• Temp plotting error

  #24 opened 2 years ago by majorkazer
  2

• No MCPs identified for these cell types

  #21 opened 2 years ago by jfckkiu
  7

• allowed labels for `DIALOGUE.run(pheno=)`

  #2 opened 2 years ago by yugeji
  3

• I see `..` comparisons in the MCPs output

  #20 opened 2 years ago by abs51295
  2

• how to extract necessary parameters from seurat object into dialogue?

  #22 opened 2 years ago by Wulin-Tan
  5

• Error in quantile.default(x, 1 - cap) : missing values and NaN's not allowed if 'na.rm' is FALSE

  #18 opened 2 years ago by cubense
  3

• 10x data format

  #17 opened 2 years ago by zhangch365
  0

• DIALOGUE and batch correction

  #16 opened 2 years ago by kanefos
  2

• Trouble running main Dialogue function

  #1 opened 2 years ago by amr15
  2

• NA reported for `phenoZ`

  #3 opened 2 years ago by yugeji
  2

• can't replicate MCP results fig4 paper

  #7 opened 2 years ago by bio-la
  6

• Issue with get.abundant function in DIALOGUE1 with abn.c=15

  #10 opened 2 years ago by DavidB-XI
  5

• t.test.groups and t.test.mat not included

  #5 opened 2 years ago by tessadgreen
  2

• Tutorial Example Issue

  #14 opened 2 years ago by vestalgd
  2

• Inconsistency with if statement check in DIALOGUE.cell.type.R

  #9 opened 2 years ago by DavidB-XI
  3

• license

  #8 opened 2 years ago by Zethson
  2

• A few issues when trying to start using method

  #4 opened 3 years ago by tessadgreen
  5