rietho/IPO

Issues

• Can parameters obtained from IPO's grouping optimization be used in both the alignment and grouping steps using PeakGroupsParam during alignment?

  #75 opened 3 months ago by YUANMENG-1
  2

• Error in resultIncreased(history) : No isotopes have been detected, peak picking not optimizable by IPO!

  #74 opened 7 months ago by v-v1150n
  0

• error during oprimisation

  #73 opened a year ago by samuelbertrand44
  3

• Too much time for optimization!!

  #72 opened 2 years ago by arpita-007
  6

• checks are failing due to mzData

  #71 opened 2 years ago by rietho
  5

• Build error due to removed mzData report

  #69 opened 2 years ago by sneumann
  0

• User manual for IPO

  #68 opened 3 years ago by HuanLab
  0

• sampleGroup error... I think.

  #67 opened 4 years ago by Phylloxera
  0

• Issues running IPO on cluster with 15 files

  #66 opened 5 years ago by adelabriere
  2

• definition of grouping optimization score leads to poor results in some cases

  #65 opened 4 years ago by tew42
  1

• IPO parallelizing not working, large scale dataset hundreds to thousands of samples

  #64 opened 5 years ago by victorfrnak
  3

• Unable install any packages in R-3.2.2 version

  #30 opened 9 years ago by anupb08
  20

• Workers / Slaves numbers for IPO on clusters

  #63 opened 5 years ago by ThomasPouplin
  0

• std::bad_alloc error

  #62 opened 6 years ago by danagibbon
  2

• xcmsSetStatistic() may produce model with suboptimal results

  #61 opened 6 years ago by rickhelmus
  2

• Error in object@backend$getAllScanHeaderInfo()

  #60 opened 6 years ago
  1

• Determining the number of xcms runs and DoEs for an optimization run

  #59 opened 6 years ago by etrh
  1

• optimizeXcmsSet expects parameters that are not even used by and related to centWave

  #57 opened 6 years ago by etrh
  2

• stop worker failed, Error in serialize, error writing to connection

  #58 opened 6 years ago by etrh
  1

• IPO optimized parameter showed peak data insertion problem

  #56 opened 7 years ago by Titan100
  2

• ways to improve IPO performance

  #55 opened 7 years ago by blueskypie
  5

• Chromatographic peak detection failed for all files

  #54 opened 7 years ago
  3

• Last IPO version (1.7.5) before Bioconductor release

  #47 opened 7 years ago by sneumann
  1

• Step/increment issue

  #46 opened 7 years ago by Brainpiercing
  3

• Optimization time issue

  #39 opened 7 years ago by Titan100
  21

• Error when plotting

  #53 opened 7 years ago by sneumann
  5

• How to optimize the centWave parameter prefilter two values

  #52 opened 7 years ago by ljsjwly
  2

• Option to disable plotting

  #51 opened 7 years ago by rietho
  0

• Error with calcPPS function

  #50 opened 7 years ago by lauzikaite
  11

• Parallelisation issue (?)

  #49 opened 7 years ago by lauzikaite
  11

• Issue running optimizeXcmsSet() with CAMERA isotope peak detection on multiple files.

  #48 opened 7 years ago by crmclean
  2

• nSlaves deprecated, update to BiocParallel

  #44 opened 8 years ago by jorainer
  16

• writeRScript executes code within function?

  #25 opened 8 years ago by tobigithub
  3

• Error "checkForRemoteErrors(val) : 2 nodes produced errors" when using IPO

  #33 opened 8 years ago by jamesrco
  7

• Image folder for WIKI pages

  #24 opened 8 years ago by tobigithub
  4

• Problems installing IPO in R-3.2.2 version

  #31 opened 8 years ago by Jiaqc
  0

• MacOSX: Different results for xcmsSet.centWave.mzdiff

  #42 opened 8 years ago by lecorguille
  5

• Error in .local(object, ...) : Dimensions of profile matrices do not match !

  #43 opened 8 years ago by mheiser-md
  6

• DoE plotting error

  #45 opened 8 years ago by Mexxxx
  3

• Unloading snow namespace

  #40 opened 8 years ago by mheiser-md
  2

• Update install guide

  #41 opened 8 years ago by mhische-md
  1

• Design: return vales of optimizeXcmsSet() and optimizeRetGroup()

  #38 opened 8 years ago by sneumann
  1

• IPO error message for UseMethod("sendData")

  #37 opened 9 years ago by leichtle
  3

• optimizeRetGroup ignoring retcorMethod="loess"

  #36 opened 9 years ago by sneumann
  5

• Installing IPO error

  #34 opened 9 years ago by jjkellogg
  2

• Unexpected problems with the netCDF and mzXML files

  #32 opened 9 years ago by Jiaqc
  1

• MakeCluster(nSlaves, type = "PSOCK")

  #28 opened 9 years ago by tobigithub
  5

• MakeCluster(nSlaves, type = "PSOCK")

  #29 opened 9 years ago by tobigithub
  1

• Lipidomics set creates warnings about profile mode

  #26 opened 9 years ago by tobigithub
  1

• Unpredictive behaviour with library(Rmpi) installed

  #27 opened 9 years ago by tobigithub
  2