Pinned Repositories
anndata
Annotated data.
mudata
Multimodal Data (.h5mu) implementation for Python
muon
muon is a multimodal omics Python framework
rapids_singlecell
Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.
scanpy
Single-cell analysis in Python. Scales to >1M cells.
scanpy-tutorials
Scanpy Tutorials.
scirpy
A scanpy extension to analyse single-cell TCR and BCR data.
scvi-tools
Deep probabilistic analysis of single-cell and spatial omics data
spatialdata
An open and interoperable data framework for spatial omics data
squidpy
Spatial Single Cell Analysis in Python
scverse's Repositories
scverse/muon
muon is a multimodal omics Python framework
scverse/mudata
Multimodal Data (.h5mu) implementation for Python
scverse/scanpy_usage
Scanpy use cases.
scverse/Muon.jl
Muon for Julia
scverse/scvi-tools-skeleton
Template repository for creating novel models with scvi-tools
scverse/conference-2024
Slides and Notebooks for scverse 2024
scverse/anndata-tutorials
Use cases for anndata.
scverse/muon-tutorials
Tutorials for multimodal omics data analysis
scverse/simple-scvi
Simple scVI implementation
scverse/governance
Governance docs for scverse
scverse/pertpy-tutorials
scverse/rapids_singlecell-notebooks
scverse/benchmark
Code for running benchmarks
scverse/multi-condition-comparisions
Functions for analyzing and visualizing multi-condition single-cell data (prototypes created at Cambridge hackathon)
scverse/scverse-io
Read various formats into AnnData and MuData
scverse/muon-site
Muon website
scverse/.github
scverse/cookiecutter-scverse-presentation
Introduction to our template
scverse/scvi-colab
Lightweight helper to install scvi-tools in Google Colab
scverse/scvi-tools-site
scverse/test-gpu-ci