sdsc-ordes/modos-api

Issues

• [Feature request]: Support terminology codes

  #103 opened 4 months ago by cmdoret
  0

• [Feature request]: Incorporate metabolomics and proteomics data

  #91 opened 5 months ago by nctoussaint
  2

• Add array api function to simplify adding arrays to modo

  #38 opened 8 months ago by almutlue
  1

• [Feature request]: Implement ci workflow for release

  #93 opened 5 months ago by almutlue
  0

• [Feature request]: streamline remote interactions

  #88 opened 5 months ago by cmdoret
  0

• Consistent use of endpoint as attribute/argument name

  #79 opened 5 months ago by almutlue
  0

• [Feature request]: implement logger

  #92 opened 5 months ago by almutlue
  1

• modos sync to update based on yaml file

  #60 opened 5 months ago by cmdoret
  3

• [Feature request]: stream command

  #86 opened 5 months ago by cmdoret
  0

• clearer handling of `data_path` on creation

  #58 opened 5 months ago by cmdoret
  0

• feat(cli): add stream command to cli

  #84 opened 5 months ago by almutlue
  1

• [Feature request]: infer `data_path`

  #85 opened 5 months ago by cmdoret
  0

• `modo.update_element()` does not update modo metadata

  #81 opened 5 months ago by almutlue
  0

• Enable `extract_metadata()` to access remote cram files

  #27 opened 5 months ago by almutlue
  1

• auto-generate identifiers

  #56 opened 5 months ago by cmdoret
  1

• allow deleting entire MODO

  #57 opened 6 months ago by cmdoret
  0

• allow virtual host-style buckets for s3

  #63 opened 6 months ago by cmdoret
  2

• template s3 endpoint in htsget config file

  #24 opened 6 months ago by cmdoret
  1

• region-based filtering not working in htsget

  #51 opened 6 months ago by cmdoret
  1

• Autofill `last_update_date` and `creation_date` when using python api

  #48 opened 6 months ago by almutlue
  0

• Use consistent element ids within modo

  #28 opened 6 months ago by almutlue
  4

• Code clarity: Restructure code dividing modo into remote and local subclass

  #29 opened 6 months ago by almutlue
  0

• Automatically add cram index file

  #41 opened 6 months ago by almutlue
  1

• /meta endpoint broken in REST API

  #59 opened 6 months ago by cmdoret
  0

• Allow linking files instead of copying

  #61 opened 7 months ago by almutlue
  0

• Enable automatic metadata enrichment from cli

  #37 opened 8 months ago by almutlue
  0

• data_path should be auto populated

  #54 opened 7 months ago by cmdoret
  0

• Improve modo.list_arrays() display

  #39 opened 8 months ago by almutlue
  0

• Fail directly on not accepted prompt entries

  #33 opened 7 months ago by almutlue
  0

• fix typo in the docs

  #47 opened 7 months ago by AssafSternberg
  0

• remove mutable default values from function arguments

  #50 opened 7 months ago by cmdoret
  0

• Add support for BCF format

  #36 opened 7 months ago by cmdoret
  1

• ci jobs for slow server tests

  #46 opened 7 months ago by cmdoret
  0

• Expand modo --help message to show all

  #34 opened 7 months ago by almutlue
  2

• increase client_max_body_size in nginx

  #40 opened 8 months ago by cmdoret
  0

• add list of service urls for `/` path on server

  #35 opened 8 months ago by cmdoret
  1

• make modo add remote-compatible

  #22 opened 8 months ago by cmdoret
  1

• Allow client to stream cram from htsget server

  #25 opened 9 months ago by cmdoret
  1

• add ci to build client (maybe server) image

  #21 opened 9 months ago by almutlue
  1

• stream CRAM data via htsget

  #16 opened 9 months ago by cmdoret
  1

• fix server metadata when multiple modos

  #19 opened 9 months ago by cmdoret
  0

• instantiation of remote MODO

  #15 opened 9 months ago by cmdoret
  1

• handle copying data files into archive

  #7 opened 10 months ago by cmdoret
  1

• Disconnect zarr hierarchy from has_part relationship

  #5 opened 10 months ago by cmdoret
  1

• reverse proxy in docker-compose

  #13 opened 10 months ago by cmdoret
  0

• Simplify MODO creation

  #8 opened 10 months ago by cmdoret
  1

• Enable import from yaml file

  #4 opened a year ago by cmdoret
  0