sinsukehlab

sinsukehlab's Stars

• zed-industries/zed

  Code at the speed of thought – Zed is a high-performance, multiplayer code editor from the creators of Atom and Tree-sitter.

  Language:Rust56.6k24011.6k3.8k

• google-deepmind/alphafold

  Open source code for AlphaFold 2.

  Language:Python13.4k2268902.4k

• aqlaboratory/openfold

  Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

  Language:Python3k47369577

• RosettaCommons/RFdiffusion

  Code for running RFdiffusion

  Language:Python2.1k47240412

• BradyAJohnston/MolecularNodes

  Toolbox for molecular animations in Blender, powered by Geometry Nodes.

  Language:Python9961838597

• HeliXonProtein/OmegaFold

  OmegaFold Release Code

  Language:Python576136283

• microsoft/evodiff

  Generation of protein sequences and evolutionary alignments via discrete diffusion models

  Language:Python575144289

• 3dem/relion

  Image-processing software for cryo-electron microscopy

  Language:C++468491.2k207

• prody/ProDy

  A Python Package for Protein Dynamics Analysis

  Language:Python46821721161

• uw-ipd/RoseTTAFold2NA

  RoseTTAFold2 protein/nucleic acid complex prediction

  Language:Python3541610679

• cctbx/cctbx_project

  Computational Crystallography Toolbox

  Language:Python24443406122

• tbepler/topaz

  Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.

  Language:Jupyter Notebook1871112867

• RBVI/ChimeraX

  Source code for molecular graphics program UCSF ChimeraX

  Language:Python182103031

• pemsley/coot

  Software for macromolecular model-building

  Language:C++1391315349

• ccpem/mrcfile

  A Python implementation of the MRC2014 file format

  Language:Python8225623

• douweschulte/pdbtbx

  A library to open/edit/save (crystallographic) Protein Data Bank (PDB) and mmCIF files in Rust.

  Language:Rust5938320

• rsanchezgarc/deepEMhancer

  Deep learning for cryo-EM maps post-processing

  Language:Python523318

• glycojones/privateer

  The Swiss Army knife for carbohydrate structure validation, refinement and analysis

  Language:C++283469

• keitaroyam/servalcat

  Structure refinement and validation for crystallography and single particle analysis

  Language:Python285183

• lightdock/lightdock-rust

  A Rust implementation of the LightDock macromolecular docking software

  Language:Rust27885

• MonomerLibrary/monomers

  dictionary of monomers and links

  166837

• jiangjiansen/relion_composite_masks

  Language:C++13001

• yukiregista/DSC_STUDY

  Language:Jupyter Notebook11253