slbai01

slbai01's Stars

• togettoyou/hub-mirror

  🚀 通过 GitHub Actions 将 docker.io、gcr.io、registry.k8s.io、k8s.gcr.io、quay.io、ghcr.io 等国外镜像转换为国内镜像加速下载

  Language:Go91042.9k504

• cmdcolin/awesome-genome-visualization

  A list of interesting genome browser or genome-browser-like implementations

  Language:TypeScript826289107

• lpikora/bing-wallpaper-daily-mac-multimonitor

  Bash Script for download and set Bing Daily Wallpaper on all monitors for macOS

  Language:Shell15341217

• baoxingsong/AnchorWave

  Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation

  Language:C++14585919

• HuiyangYu/PanDepth

  An ultra-fast and efficient genomic tool for coverage calculation

  Language:C1284104

• chasewnelson/SNPGenie

  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

  Language:Perl102107237

• qiao-xin/DupGen_finder

  A pipeline used to identify different modes of duplicated gene pairs

  Language:C++9042129

• BioOmics/iSeq

  Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.

  Language:Shell83168

• leonardojo/ggPlantmap

  Language:R79525

• HuffordLab/NAM-genomes

  Detailed bioinformatics scripts and methods used in the NAM genome paper.

  Language:R6915628

• qjiangzhao/TEtrimmer

  TEtrimmer: a novel tool to automate manual curation of transposable elements

  Language:Python585162

• DessimozLab/OMArk

  Language:Python536186

• bpucker/teaching

  This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.

  465010

• Ensembl/plant-scripts

  Scripting analyses of genomes in Ensembl Plants

  Language:Perl361878

• arendsee/phylostratr

  An R framework for phylostratigraphy

  Language:R332317

• gillislab/MetaNeighbor

  A method to rapidly assess cell type identity using both functional and random gene sets

  Language:R329

• pierrepeterlongo/back_to_sequences

  Language:Rust31126

• ranwez/MACSE_V2_PIPELINES

  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated within singularity containers and sometimes combined in nextflow workflows.

  Language:Shell313129

• jkimlab/PAPipe

  29261

• apcamargo/tspex

  tspex: tissue-specificity calculator

  Language:Python26489

• OliveiraDS-hub/ChimeraTE

  A pipeline to detect chimeric transcripts derived from genes and transposable elements.

  Language:Python201216

• Zhenlisme/heliano

  HELIANO is a software for detection and classification of Helitron-like elements.

  Language:Python15321

• ChangSuBiostats/CS-CORE

  R package for CS-CORE, a statistical method for cell-type-specific co-expression inference from single cell RNA-sequencing data

  Language:R14121

• Bgi-LUSH/LUSH-DNASeq-pipeline

  Fast and accurate DNASeq Variant Calling workflow composed of LUSH-toolkits

  Language:Shell132

• h836472/ContScout

  ContScout sequence contamination filter tool

  Language:R132

• ulelab/clipplotr

  A tool to facilitate comparative visualisation of CLIP data

  Language:R131295

• ucdavis-bioinformatics/scRNA_shiny

  scRNA-seq Shiny App

  Language:R11616

• legumeinfo/pandagma

  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.

  Language:Shell10901

• malemay/katcher

  Extract aligned reads containing a set of k-mers

  Language:C5120

• aayudh454/GWAS-and-variant-callings

  4201