smangul1/rop

--jobArray and skipPreliminary doesn't work

smangul1 opened this issue · 3 comments

smangul1 commented

while read line ; do python /u/home/s/serghei//collab/code/rop/rop.py --qsubArray --skipPreliminary $PWD/data/${line}.fastq $PWD//ropBrain/${line} ;done<1.sample

harrydgnt commented

What is the problem? Can you show me an example/

harrydgnt commented

I am not sure what the problem is. It just doesnt work?

smangul1 commented

Let me check again and i will let you know