Mac OS error with :python -c "import opensim"
katUTC opened this issue · 2 comments
Hello,
Having reinstalled anaconda and conferred with my collaborators concerning the issues I am having installing for a MacOS, I have decided to post concerning this issue. I've found that someone else had the same issue and posted in a forum elsewhere with no response.
The installation goes without error until the step:
python -c "import opensim"
which gives the following error:
Fatal Python error: PyThreadState_Get: no current thread
Abort trap: 6
conda info gives:
active environment : opensim-rl
active env location : /Users/kat/anaconda2/envs/opensim-rl
shell level : 2
user config file : /Users/kat/.condarc
populated config files : /Users/kat/.condarc
conda version : 4.6.11
conda-build version : 3.17.8
python version : 2.7.16.final.0
base environment : /Users/kat/anaconda2 (writable)
channel URLs : https://repo.anaconda.com/pkgs/main/osx-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/free/osx-64
https://repo.anaconda.com/pkgs/free/noarch
https://repo.anaconda.com/pkgs/r/osx-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /Users/kat/anaconda2/pkgs
/Users/kat/.conda/pkgs
envs directories : /Users/kat/anaconda2/envs
/Users/kat/.conda/envs
platform : osx-64
user-agent : conda/4.6.11 requests/2.21.0 CPython/2.7.16 Darwin/18.7.0 OSX/10.14.6
UID:GID : 501:20
netrc file : None
offline mode : False
and Conda list gives:
WARNING: The conda.compat module is deprecated and will be removed in a future release.
packages in environment at /Users/kat/anaconda2/envs/opensim-rl:
Name Version Build Channel
ca-certificates 2019.9.11 hecc5488_0 conda-forge
certifi 2019.6.16 py36_1 conda-forge
cloudpickle 1.2.2 pypi_0 pypi
curl 7.65.3 h22ea746_0 conda-forge
cycler 0.10.0 pypi_0 pypi
expat 2.2.5 h6de7cb9_1003 conda-forge
future 0.17.1 pypi_0 pypi
gettext 0.19.8.1 h46ab8bc_1002 conda-forge
git 2.23.0 pl526hbdf3604_2 conda-forge
gym 0.14.0 pypi_0 pypi
kiwisolver 1.1.0 pypi_0 pypi
krb5 1.16.3 hcfa6398_1001 conda-forge
lapack 3.6.1 ha44fe06_2 conda-forge
libcurl 7.65.3 h16faf7d_0 conda-forge
libcxx 4.0.1 hcfea43d_1
libcxxabi 4.0.1 hcfea43d_1
libedit 3.1.20181209 hb402a30_0
libffi 3.2.1 h475c297_4
libgfortran 3.0.1 h93005f0_2
libiconv 1.15 h01d97ff_1005 conda-forge
libssh2 1.8.2 hcdc9a53_2 conda-forge
matplotlib 3.1.1 pypi_0 pypi
ncurses 6.1 h0a44026_1
numpy 1.17.2 pypi_0 pypi
openblas 0.2.19 0 kidzik
opensim 4.0.0 py36_17 kidzik
openssl 1.1.1c h01d97ff_0 conda-forge
osim-rl 3.0.6 pypi_0 pypi
pcre 8.41 h0a44026_1003 conda-forge
perl 5.26.2 haec8ef5_1006 conda-forge
pip 19.2.3 py36_0
pyglet 1.3.2 pypi_0 pypi
pyparsing 2.4.2 pypi_0 pypi
python 3.6.9 h359304d_0
python-dateutil 2.8.0 pypi_0 pypi
readline 7.0 h1de35cc_5
redis 3.3.8 pypi_0 pypi
scipy 1.3.1 pypi_0 pypi
setuptools 41.2.0 py36_0
six 1.12.0 pypi_0 pypi
sqlite 3.29.0 ha441bb4_0
timeout-decorator 0.4.1 pypi_0 pypi
tk 8.6.9 h2573ce8_1003 conda-forge
wheel 0.33.6 py36_0
xz 5.2.4 h1de35cc_4
zlib 1.2.11 h1de35cc_3
Aside:
I have tried on anaconda 3 and anaconda 2 which give the exact same errors.
I'ld be ever so grateful for some advice to get this to work on a Mac. Thank you so much in advance.
-Kat
@katUTC did you find a solution to this? I have the exact same problem!
(opensim-rl) Vittorios-MBP:OpenSimChallenge vittorio$ conda list
# packages in environment at /Users/vittorio/opt/anaconda3/envs/opensim-rl:
#
# Name Version Build Channel
ca-certificates 2019.11.27 0
certifi 2019.11.28 py36_0
cloudpickle 1.2.2 pypi_0 pypi
cycler 0.10.0 pypi_0 pypi
expat 2.2.6 h0a44026_0
future 0.18.2 pypi_0 pypi
git 2.23.0 pl526h6951d83_0
gym 0.15.4 pypi_0 pypi
kiwisolver 1.1.0 pypi_0 pypi
krb5 1.16.4 hddcf347_0
lapack 3.6.1 ha44fe06_2 conda-forge
libcurl 7.67.0 h051b688_0
libcxx 4.0.1 hcfea43d_1
libcxxabi 4.0.1 hcfea43d_1
libedit 3.1.20181209 hb402a30_0
libffi 3.2.1 h475c297_4
libgfortran 3.0.1 h93005f0_2
libiconv 1.15 h01d97ff_1005 conda-forge
libssh2 1.8.2 ha12b0ac_0
matplotlib 3.1.2 pypi_0 pypi
ncurses 6.1 h0a44026_1
numpy 1.18.1 pypi_0 pypi
openblas 0.2.19 0 kidzik
opencv-python 4.1.2.30 pypi_0 pypi
opensim 4.0.0 py36_17 kidzik
openssl 1.1.1d h1de35cc_3
osim-rl 3.0.11 pypi_0 pypi
pcre 8.43 h0a44026_0
perl 5.26.2 haec8ef5_1006 conda-forge
pip 19.3.1 py36_0
pyglet 1.3.2 pypi_0 pypi
pyparsing 2.4.6 pypi_0 pypi
python 3.6.10 h359304d_0
python-dateutil 2.8.1 pypi_0 pypi
readline 7.0 h1de35cc_5
redis 3.3.11 pypi_0 pypi
scipy 1.4.1 pypi_0 pypi
setuptools 44.0.0 py36_0
six 1.13.0 pypi_0 pypi
sqlite 3.30.1 ha441bb4_0
timeout-decorator 0.4.1 pypi_0 pypi
tk 8.6.8 ha441bb4_0
wheel 0.33.6 py36_0
xz 5.2.4 h1de35cc_4
zlib 1.2.11 h1de35cc_3
Hi! Does anyone have a solution for this problem? I also have this problem.