staszekdh

staszekdh's Stars

• fyrestone/pycode_similar

  A simple plagiarism detection tool for python code

  Language:Python17638

• labstructbioinf/dc2_oligo

  Prediction of oligomeric state of coiled-coil domains

  Language:Python2

• Mikel-MG/CCfrag

  Language:Python1

• flyark/AFM-LIS

  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)

  Language:Jupyter Notebook364

• ianandersonlol/AFSJson

  A script to make Jsons with Alphafold3

  Language:Python3

• evo-design/evo

  Biological foundation modeling from molecular to genome scale

  Language:Jupyter Notebook893102

• labstructbioinf/EdgeGat

  graph neural network layer for Deep Graph Library with pytorch backend

  Language:Python213

• labstructbioinf/pLM-BLAST

  Detection of remote homology by comparison of protein language model representations

  Language:Python355

• Rmadeye/ribonanza_rna

  top 10% solution to Ribonanza challenge on Kaggle

  Language:Python3

• YingfanWang/PaCMAP

  PaCMAP: Large-scale Dimension Reduction Technique Preserving Both Global and Local Structure

  Language:Jupyter Notebook48051

• steineggerlab/foldcomp

  Compressing protein structures effectively with torsion angles

  Language:C++14614

• iquasere/UPIMAPI

  UniProt Id Mapping through API

  Language:Python284

• labstructbioinf/graph_toolbox

  utilities for processing protein structures

  Language:Jupyter Notebook4

• labstructbioinf/edi

  Language:HTML2

• mmagnus/rna-tools

  🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online

  Language:Jupyter Notebook14543

• HWaymentSteele/AF_Cluster

  Predict multiple protein conformations using sequence clustering and AlphaFold2.

  Language:Jupyter Notebook12318

• Rmadeye/protein_analysis_tools

  USAlign, Rosetta, Amber and other apps script analysis

  Language:Python54

• maovshao/PLMSearch

  PLMSearch enables accurate and fast homologous protein search with only sequences as input

  Language:Jupyter Notebook505

• smirarab/sepp

  Ensemble of HMM methods (SEPP, TIPP, UPP)

  Language:Python8138

• cosmograph-org/cosmos

  GPU-accelerated force graph layout and rendering

  Language:TypeScript79653

• KosinskiLab/AlphaPulldown

  Language:Python18440

• koaning/bulk

  A Simple Bulk Labelling Tool

  Language:Python47141

• MathOnco/Curvogram

  Method for plotting histograms on a curve using a West Transform

  Language:Jupyter Notebook102

• rdk/p2rank

  P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.

  Language:Groovy23431

• DeepChainBio/bio-transformers

  bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.

  Language:Python14131

• sokrypton/ColabFold

  Making Protein folding accessible to all!

  Language:Jupyter Notebook1.8k468

• microsoft/FLAML

  A fast library for AutoML and tuning. Join our Discord: https://discord.gg/Cppx2vSPVP.

  Language:Jupyter Notebook3.8k499

• dmlc/dgl

  Python package built to ease deep learning on graph, on top of existing DL frameworks.

  Language:Python13.2k3k

• google-deepmind/alphafold

  Open source code for AlphaFold.

  Language:Python12.2k2.2k

• mlfoundations/open_clip

  An open source implementation of CLIP.

  Language:Python9.3k928