tommyfuu
Computational biologist or bio-enthusiastic computer scientist?
Memorial Sloan Kettering Cancer Center/Weill Cornell MedicineNew York, NY
tommyfuu's Stars
const-ae/ggsignif
Easily add significance brackets to your ggplots
salesforce/ctrl
Conditional Transformer Language Model for Controllable Generation
ablab/quast
Genome assembly evaluation tool
oschwengers/bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
MetaSUB-CAMP/camp_short-read-quality-control
wdl2459/ConQuR
Batch effects removal for microbiome data via conditional quantile regression
ruppinlab/tcga-microbiome-prediction
Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-seq sequencing data for 32 TCGA cancers (Poore et al. Nature 2020), including equivalent models using TCGA RNA-seq gene expression and combined microbial abundance and gene expression for comparison.
FrederickHuangLin/ANCOMBC
Differential abundance (DA) and correlation analyses for microbial absolute abundance data
SmritiChawla/Precily
biobakery/anpan
slowkow/harmonypy
🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
cellgeni/scRNA.seq.course
Analysis of single cell RNA-seq data course
bsml320/VAEN
A deep generative neural network based approach to impute drug response
hashirshoaeb/home
The personal website/portfolio template by Hashir Shoaib. Built using React and Bootstrap.
tommyfuu/MetaDiversityTutorial
Incredibly simple tutorial for conducting alpha diversity and beta-diversity analysis, visualization, and group-wise comparison in R.
cBioPortal/GSoC
Documentation repository of Google Summer of Code (GSoC) project ideas for cBioPortal and related projects
kemaloksuz/ObjectDetectionImbalance
Lists the papers related to imbalance problems in object detection [TPAMI]
openbiox/awosome-bioinformatics
A curated list of resources for learning bioinformatics.
snowdj/CS228_PGM
🌀 Stanford CS 228 - Probabilistic Graphical Models
alvinwan/neural-backed-decision-trees
Making decision trees competitive with neural networks on CIFAR10, CIFAR100, TinyImagenet200, Imagenet
hanskrupakar/COCO-Style-Dataset-Generator-GUI
A simple GUI-based COCO-style JSON Polygon masks' annotation tool to facilitate quick and efficient crowd-sourced generation of annotation masks and bounding boxes. Optionally, one could choose to use a pretrained Mask RCNN model to come up with initial segmentations.
matterport/Mask_RCNN
Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow
pokaxpoka/deep_Mahalanobis_detector
Code for the paper "A Simple Unified Framework for Detecting Out-of-Distribution Samples and Adversarial Attacks".
omegafragger/DDU
Code for Deterministic Neural Networks with Appropriate Inductive Biases Capture Epistemic and Aleatoric Uncertainty
ICGC-TCGA-PanCancer/TumorType-WGS
Classifying tumor types based on Whole Genome Sequencing (WGS) data
hgrecco/pint
Operate and manipulate physical quantities in Python
ropensci/biomartr
Genomic Data Retrieval with R
tommyfuu/BioCalculator
Creating a calculator for common molecular biology lab experiments.
chatwoot/chatwoot
Open-source live-chat, email support, omni-channel desk. An alternative to Intercom, Zendesk, Salesforce Service Cloud etc. 🔥💬
tommyfuu/BioFoundry
BioFoundry Project at the HMC BioMakerspace