3d-slicer-extension
There are 218 repositories under 3d-slicer-extension topic.
Project-MONAI/MONAILabel
MONAI Label is an intelligent open source image labeling and learning tool.
Slicer/SlicerJupyter
Extension for 3D Slicer that allows the application to be used from Jupyter notebook
QIICR/dcmqi
dcmqi (DICOM for Quantitative Imaging) is a free, open source C++ library for conversion between imaging research formats and the standard DICOM representation for image analysis results
SlicerRt/SlicerRT
Open-source toolkit for radiation therapy research, an extension of 3D Slicer. Features include DICOM-RT import/export, dose volume histogram, dose accumulation, external beam planning (TPS), structure comparison and morphology, isodose line/surface generation, etc.
KitwareMedical/SlicerVirtualReality
A Slicer extension that enables user to interact with a Slicer scene using virtual reality.
SlicerHeart/SlicerHeart
3D Slicer extension for cardiac analysis
SlicerIGT/SlicerIGT
Modules supporting image-guided interventions in 3D Slicer.
SlicerMorph/SlicerMorph
Extension to import microCT data and conduct 3D morphometrics in Slicer
DCBIA-OrthoLab/SlicerAutomatedDentalTools
A 3D Slicer extension to use AMASSS, ALI-CBCT and ALI-IOS
SlicerDMRI/SlicerDMRI
Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.
rbumm/SlicerLungCTAnalyzer
This is a 3D Slicer extension for segmentation and spatial reconstruction of infiltrated, collapsed, and emphysematous areas in lung CT.
Slicer/ExtensionsIndex
Slicer extensions index
fedesemeraro/SlicerTomoSAM
An extension of 3D Slicer using the Segment Anything Model (SAM) to aid the segmentation of 3D data from tomography or other imaging techniques.
lassoan/SlicerElastix
This extension makes available Elastix medical image registration toolkit (http://elastix.isi.uu.nl/) available in Slicer.
NIRALUser/SPHARM-PDM
Shape analysis has become of increasing interest to the medical community due to its potential to precisely locate morphological changes between healthy and pathological structures. SPHARM-PDM is a tool that computes point-based models using a parametric boundary description for the computing of Shape analysis.
lassoan/SlicerSegmentEditorExtraEffects
Many additional segmentation tools for 3D Slicer's Segment Editor
DCBIA-OrthoLab/SlicerDentalModelSeg
This extension aims to provide a GUI for a deep-learning automated teeth segmentation tool that we developed at the University of North Carolina in Chapel Hill in collaboration with the University of Michigan in Ann Arbor.
gaudot/SlicerDentalSegmentator
3D Slicer extension for fully-automatic segmentation of CT and CBCT dental volumes.
fepegar/SlicerPyTorch
This extension contains only a module with some tools to install PyTorch inside Slicer, using the best possible version.
R-Vessel-X/SlicerRVXLiverSegmentation
3D Slicer plugin for Liver Anatomy Annotation by R-Vessel-X
sebastianandress/Slicer-SurfaceWrapSolidify
3D Slicer extension which contains a Segment Editor Effect that solidifies and extracts the surface of a segmentation
SlicerIGT/SlicerBoneReconstructionPlanner
3D Slicer module for planning mandible reconstruction surgery using fibula flap
SlicerRt/SlicerDebuggingTools
Extension for 3D Slicer containing various tools for module development and debugging
KitwareMedical/SlicerITKUltrasound
Ultrasound image formation, processing, and analysis. Interfaces built off the ITKUltrasound library.
zapaishchykova/SegmentationReview
Slicer3D extension for rating using Likert-type score Deep-learning generated segmentations, with segment editor functionality. Created to speed up the validation process done by a clinician - the dataset loads in one batch with no need to load masks and volumes separately.
Project-MONAI/SlicerMONAIViz
MONAIViz - 3D Slicer Extension
QIICR/QuantitativeReporting
Segmentation-based measurements with DICOM import and export of the results.
SenonETS/3DSlicerTutorial_ExtensionModuleDevelopment
SourceCode of serial tutorials on 3D Slicer extension development for beginners
fepegar/SlicerTorchIO
3D Slicer module for TorchIO.
NIRALUser/DTIPrep
DTIPrep performs a "Study-specific Protocol" based automatic pipeline for DWI/DTI quality control and preparation
QIICR/Slicer-PETDICOMExtension
3D Slicer extension containing tools for importing DICOM PET series
QIICR/TCIABrowser
3D Slicer module for browsing and downloading medical imaging collections from The Cancer Imaging Archive (TCIA).
ALive-research/Slicer-Liver
3D Slicer extension for liver analysis and therapy planning
Auditory-Biophysics-Lab/Slicer-ABLTemporalBoneSegmentation
3D Slicer extension featuring spacing resampling, fiducial registration, and rigid registration of temporal bone images.
radxtools/collageradiomics
Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by measuring entropy of co-occurrences of voxel-level gradient orientations on imaging computed within a local neighborhood.