treitpeter's Stars
openai/whisper
Robust Speech Recognition via Large-Scale Weak Supervision
meta-llama/llama3
The official Meta Llama 3 GitHub site
fastai/fastbook
The fastai book, published as Jupyter Notebooks
plotly/plotly.py
The interactive graphing library for Python :sparkles: This project now includes Plotly Express!
Sinaptik-AI/pandas-ai
Chat with your database (SQL, CSV, pandas, polars, mongodb, noSQL, etc). PandasAI makes data analysis conversational using LLMs (GPT 3.5 / 4, Anthropic, VertexAI) and RAG.
mwaskom/seaborn
Statistical data visualization in Python
facebookresearch/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
soedinglab/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
eggnogdb/eggnog-mapper
Fast genome-wide functional annotation through orthology assignment
hyattpd/Prodigal
Prodigal Gene Prediction Software
vdemichev/DiaNN
DIA-NN - a universal automated software suite for DIA proteomics data analysis.
lazear/sage
Proteomics search & quantification so fast that it feels like magic
Nesvilab/FragPipe
A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
MannLabs/alphapeptdeep
Deep learning framework for proteomics
Noble-Lab/casanovo
De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
unode/polypomo
Pomodoro widget for use with polybar (or standalone if you are so inclined)
MannLabs/ProteomicsVisualization
This is a collection of minimal code to visualize various aspects of proteomics data.
MannLabs/alphapeptstats
Python Package for the downstream analysis of mass-spectrometry-based proteomics data
instadeepai/InstaNovo
De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments
MannLabs/directlfq
Fast and accurate label-free quantification for small and very large numbers of proteomes
Liang-yc/ECUSTFD-resized-
ECUSTFD is a food image dataset for evaluating computer vision-based methods. ECUSTFD includes 2978 images.
MannLabs/alphaviz
AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquired with Bruker instrument.
MannLabs/OmicLearn
🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
bhattlab/SmORFinder
A command line tool to identify and annotate small proteins in microbial sequencing datasets.
theGreatHerrLebert/sagepy
A python interface to the SAGE search engine for mass spectrometry proteomics
unode/fna2faa
Translate nucleotides (DNA & RNA) to aminoacid using IUPAC ambiguity codes
karlactm/Proteogenomics
elolab/glaDIAtor
Tool for processing metaproteomics DDA and DIA data.
MannLabs/slurm_scripts
terrematte/dbPepVar