tyleryasaka

tyleryasaka's Stars

• facebookresearch/detectron2

  Detectron2 is a platform for object detection, segmentation and other visual recognition tasks.

  Language:Python30.7k3883.5k7.5k

• SRombauts/SQLiteCpp

  SQLiteC++ (SQLiteCpp) is a smart and easy to use C++ SQLite3 wrapper.

  Language:C2.3k81250512

• YuLab-SMU/clusterProfiler

  :bar_chart: A universal enrichment tool for interpreting omics data

  Language:R1k45654256

• BlueBrain/HighFive

  HighFive - Header-only C++ HDF5 interface

  Language:C++69625376162

• sqjin/CellChat

  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

  Language:R64314727145

• prov-gigapath/prov-gigapath

  Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data

  Language:Python433611059

• kevinblighe/EnhancedVolcano

  Publication-ready volcano plots with enhanced colouring and labeling

  Language:R4151212581

• kanezaki/pytorch-unsupervised-segmentation

  Language:Python4011312100

• dmcable/spacexr

  Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

  Language:HTML3201020373

• jinworks/CellChat

  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

  Language:R300224952

• kanezaki/pytorch-unsupervised-segmentation-tip

  Language:Python26151857

• partridgejiang/Kekule.js

  A Javascript cheminformatics toolkit.

  Language:JavaScript2511621662

• geneontology/go-ontology

  Source ontology files for the Gene Ontology

  Language:Makefile2233720.3k40

• JEFworks-Lab/STdeconvolve

  Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data

  Language:R11355713

• Nesvilab/MSFragger

  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

  Language:HTML108132587

• MSGFPlus/msgfplus

  MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database.

  Language:Java772314536

• xtarx/StainGAN

  Language:Python643831

• sivenchinniah/Pokemanki

  Language:Python5865218

• CCMS-UCSD/GNPS_Workflows

  Public Workflows at GNPS

  Language:HTML55755544

• khtao/StainNet

  StainNet: a fast and robust stain normalization network

  Language:Jupyter Notebook471410

• aertslab/ScoMAP

  ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.

  Language:R25724

• ablab/npdtools

  Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry data

  241559

• tmonjo/DeepSpaCE

  Language:Python21174

• LieberInstitute/dotdotdot

  Example vignette for dotdotdot software

  Language:MATLAB1861611

• pfenninglab/halLiftover-postprocessing

  Language:Python18244

• yrjia1015/THItoGene

  Code for the THItoGene

  Language:Python16151

• mohimanilab/molDiscovery

  15455

• mohimanilab/MASSTplus

  Language:C++9305

• mwang87/MetabolomicsSpectrumResolver

  Metabolomics Spectrum Resolver/Displayer

  Language:Python941001

• LieberInstitute/PTHS_mouse

  Scripts used to analyze RNAseq data from mouse models of Pitt-Hopkins Syndrome related to Phan, Bohlen et al.

  Language:PostScript3501