wshuai294
Develop new methods to decipher the complex microbiome and the human genome.
University of California, BerkeleyUSA
Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
RagTag
Tools for fast and flexible genome assembly scaffolding and improvement
pbbioconda
PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
longshot
diploid SNV caller for error-prone reads
Bacteria-assembly
Fast reference-based assembly using isolate sequencing data
Bacteria-Variant
Identify variants (snv, indel, sv) by mapping reads onto the reference.
bioconda-recipes
Conda recipes for the bioconda channel.
GutMeta_analysis_scripts
PStrain
Pstrain profiles strains in metagenomics data. It infers strain abundance and genotype for each species. Also, it has a single species mode; where given a BAM and VCF, it can phase the variants for any species.
RGC_analysis
Simulate the microbiome sample based on the RGC genomes
wshuai294's Repositories
wshuai294/PStrain
Pstrain profiles strains in metagenomics data. It infers strain abundance and genotype for each species. Also, it has a single species mode; where given a BAM and VCF, it can phase the variants for any species.
wshuai294/RGC_analysis
Simulate the microbiome sample based on the RGC genomes
wshuai294/Bacteria-assembly
Fast reference-based assembly using isolate sequencing data
wshuai294/Bacteria-Variant
Identify variants (snv, indel, sv) by mapping reads onto the reference.
wshuai294/bioconda-recipes
Conda recipes for the bioconda channel.
wshuai294/GutMeta_analysis_scripts