xiuru

xiuru's Stars

• f/awesome-chatgpt-prompts

  This repo includes ChatGPT prompt curation to use ChatGPT better.

  Language:HTML112k1.4k015.3k

• tanghaibao/jcvi

  Python library to facilitate genome assembly, annotation, and comparative genomics

  Language:Python75636483186

• davidemms/OrthoFinder

  Phylogenetic orthology inference for comparative genomics

  Language:Python69927900188

• ComparativeGenomicsToolkit/cactus

  Official home of genome aligner based upon notion of Cactus graphs

  Language:C51922852111

• hbctraining/In-depth-NGS-Data-Analysis-Course

  Language:HTML437455268

• bedops/bedops

  :microscope: BEDOPS: high-performance genomic feature operations

  Language:C3001627359

• hbctraining/Intro-to-ChIPseq

  Intro to ChIPseq using HPC

  Language:SCSS2861070154

• Magdoll/cDNA_Cupcake

  Miscellaneous collection of Python and R scripts for processing Iso-Seq data

  Language:Python25718213104

• ConesaLab/SQANTI3

  Tool for the Quality Control of Long-Read Defined Transcriptomes

  Language:HTML1981028149

• loosolab/TOBIAS

  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

  Language:Python1941626741

• PASApipeline/PASApipeline

  PASA software

  Language:Perl1741330457

• kundajelab/bpnet

  Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them

  Language:Jupyter Notebook141153934

• harvardinformatics/ATAC-seq

  Language:Python12010040

• hahnlab/CAFE5

  Version 5 of the CAFE phylogenetics software

  Language:C++113713822

• hahnlab/CAFE

  Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.

  Language:C++112810136

• lawremi/ggbio

  Grid and ggplot2 based visualization for biological data

  Language:R1111014624

• kvittingseerup/IsoformSwitchAnalyzeR

  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)

  Language:R101423318

• jsxlei/SCALE

  Single-cell ATAC-seq analysis via Latent feature Extraction

  Language:Python9962719

• EI-CoreBioinformatics/mikado

  Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.

  Language:Python971232618

• parashardhapola/scarf

  Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

  Language:Python9656312

• GoekeLab/proActiv

  Estimation of Promoter Activity from RNA-Seq data

  Language:R4943514

• kentnf/iTAK

  iTAK

  Language:Python38389

• Joseph7e/MAKER-genome-annotations-tutorial

  Construct ab initio gene prediction using only BUSCO augustus models. Add in transcriptome for extra support

  18216

• PlantGeneticsLab/TIGER

  Toolkits Integrated for Genetic and Evolutionary Research

  Language:Java15223

• Uauy-Lab/WheatHomoeologExpression

  Language:Jupyter Notebook15239

• haowulab/DSS

  Language:R1414713

• Xinglab/SEASTAR

  SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA

  Language:Python12735

• plantformatics/maize_single_cell_cis_regulatory_atlas

  Language:R11235

• ChemaMD/OweniaGenome

  Annelid functional genomics reveal the origins of bilaterian life cycles - Supplementary Data

  Language:Jupyter Notebook70

• supermanwasd/RNA-Seq-Pipline-notebook

  Language:Python2100