lawremi/ggbio

Issues

• deprecated facets arg

  #173 opened 2 months ago by auldn
  0

• Don't know how to export ggbio object to a figure

  #172 opened 5 months ago by albustruong
  2

• Modify plotting options at the ggplot level

  #170 opened a year ago by jemorlanes
  0

• HTTP Error 429 iterating through ideogram generation

  #169 opened a year ago by tzvi909
  0

• rect heights when there are few rows

  #165 opened 2 years ago by jvolkening
  2

• how can I plot name for each of GRanges?

  #167 opened 2 years ago by panxiaoguang
  1

• Vignette Conversion Request

  #166 opened 2 years ago by Rohit-Satyam
  5

• Problems with `geom_bar()` when ggbio is loaded

  #161 opened 3 years ago by grimbough
  5

• Warning message: Ignoring unknown parameters (group.selfish, label, utr.geom)

  #164 opened 2 years ago by ChangqingW
  1

• tracks(xlim) doesn't work with GRanges input

  #159 opened 3 years ago by lcolladotor
  3

• plotly not support ggbio object

  #163 opened 3 years ago by cj-forJ
  2

• geom_segment Example Uses Illogical Geom Fill

  #141 opened 3 years ago by DarioS
  0

• titles lost when combining several tracks

  #154 opened 3 years ago by mgabriel01
  2

• define base pairs of start and stop for OrganismDb object autoplot (gene track)?

  #150 opened 3 years ago by wpbone06
  0

• access to the order of transcripts in layout

  #149 opened 3 years ago by mmkim1210
  1

• UTRs are overplotted by exons

  #148 opened 3 years ago by pfh
  3

• Error in checkSlotAssignment(object, name, value)

  #147 opened 3 years ago by Charles1DENG
  2

• names.expr not work

  #144 opened 3 years ago by zhang616123
  4

• Implementation of geom_hist in circular layout

  #139 opened 4 years ago by almeidasilvaf
  3

• combine ggplot2 plot with ggbio plot

  #138 opened 4 years ago by whui2bioinformatics
  3

• Bug : geom_bar for GRanges unable to set any custom label for the y axis other than the default

  #129 opened 4 years ago by sanchit-saini
  0

• ideo geom

  #123 opened 5 years ago by lfaino
  5

• Circos track ranges misaligned relative to ideogram?

  #121 opened 5 years ago by vkartha
  1

• Registered S3 method overwritten by 'GGally'

  #126 opened 4 years ago by BatoolMM
  4

• Segment not parallel

  #122 opened 4 years ago by blsfoxfox
  2

• plotRangesLinkedToData for three column

  #125 opened 4 years ago by demis001
  3

• Plot CNV graphs over an Ideogram

  #120 opened 5 years ago by andrisvAria
  2

• Hi! developers! I am using ggbio to plot gene model. Is there a way to plot only genes in gff3? I don't want transcripts in gff3.Thanks!

  #118 opened 5 years ago by chesterlee7246
  8

• Hi!

  #119 opened 5 years ago by chesterlee7246
  0

• Cannot be built with R 3.6.0

  #117 opened 6 years ago by rekado
  1

• eval_tidy error when set angle aes for 'text' geom in layout_circle

  #116 opened 6 years ago by ghbore
  1

• loading ggbio is stuck

  #112 opened 6 years ago by ghbore
  0

• Autoplot example from manual not working

  #115 opened 6 years ago by syouligan
  2

• geom_alignment and autoplot fail at "Defining UTRs..." step

  #114 opened 6 years ago by docmanny
  1

• geom_arrowrect(stat="identity") doesn't plot when all y values are identical

  #113 opened 6 years ago by granek
  0

• Error in min(c(x, xmin), na.rm = TRUE) : invalid 'type' (list) of argument

  #111 opened 6 years ago by ekernf01
  3

• Bad link on main github page for ggbio

  #110 opened 6 years ago by wvnicholson
  1

• homepage is dead.

  #109 opened 6 years ago by pwwang
  1

• The bioconductor vignette doesn't contain any plots

  #108 opened 6 years ago by mukundvarma
  1

• Problem with autoplot

  #107 opened 6 years ago by marziacremona
  1

• Problems installing version 1.29.3: class not exported from AnnotationFilter

  #106 opened 6 years ago by adomingues
  0

• stat_coverage Y-axis limits or Y-max

  #105 opened 6 years ago by chrisgulvik
  0

• Project website no longer exists

  #104 opened 6 years ago by scottgigante
  1

• Failure with dev ggplot2

  #101 opened 6 years ago by hadley
  7

• Error: Don't know how to add o to a plot

  #103 opened 6 years ago by zhewa
  0

• Needs warning: coverage ggplot + gene track not phased with default legend

  #102 opened 6 years ago by annaquaglieri16
  0

• adding color to transcripts plot by category

  #100 opened 7 years ago by anmwinter
  4

• plotIdeogram fails on genome hg38

  #99 opened 7 years ago by ramiromagno
  2

• Equivalent of `ggplot_build` for track plots?

  #98 opened 7 years ago by mschubert
  4

• How to add gene names and thicken the links in a fusion plot

  #97 opened 7 years ago by komalsrathi
  4