zhongmicai

interested in evolution and functional genomics

Kunming institute of BotanyKunming Yunnan China

Pinned Repositories

awesome_single_cell
21
awesomeBiology
51
BioinformaticsWithPythonCookbook_2nd
Language:OpenEdge ABL60
Computer-ScienceCoursesWithVideoLectures
205
genome_evolution
Language:R21
GWASwithoutGenome
kmerGWAS, Identifying genetic variant underlying phenotypic variation in plants without complete genomes
Language:C++20
Hic_tools_collection
95
HyPhy_analysis
Selection analyses, Evolutionary Hypothesis testing, relative evolutionary rate inference, Coevolutionary analysis, codon selection analyses, compartmentalization, data file tools, miscellaneous, model comparison, molecular clock, phylogeny reconstruction, positive selection, recombination, relative rate, relative ratio
Language:HyPhy23
ngsTools
Language:R31
Vcf2SiteFrequencySpectrum
vcf to site frequency spectrum (SFS) or joint SFS of more than one population from a VCF file
Language:R30

zhongmicai's Repositories

zhongmicai/bulk2space
Language:Jupyter Notebook
zhongmicai/CCL-cGPS
A clinical genomics-guided prioritizing strategy enables accurately selecting proper cancer cell lines for biomedical research
Language:R1 0
zhongmicai/CellMatch_scCATCH
Language:R1 0
zhongmicai/DeepGEM
Language:Python1 0
zhongmicai/FIST-nD
Language:Python1 0
zhongmicai/HapHiC
Haplotype genome assembly by HiC data, based on AllHiC, better than 3d-dna
Language:Python
zhongmicai/ImSpiRE
Language:Python
zhongmicai/KANO
Language:Python
zhongmicai/MINI-EX
Motif-Informed Network Inference based on single-cell EXpression data
Language:Python1 0
zhongmicai/mosaicatcher-pipeline
Structural variant calling from single-cell Strand-seq data
Language:Jupyter Notebook
zhongmicai/scCATCH_performance_comparison
Language:HTML
zhongmicai/scCrossTalk
Language:R
zhongmicai/scDeepSort
Language:Python
zhongmicai/scDeepSort_performance_comparison
Language:R
zhongmicai/scDisProcema
Language:R1 0
zhongmicai/scRank
Language:R
zhongmicai/scTITANS
Language:R
zhongmicai/singleCelltoolPackages
Language:R1 0
zhongmicai/SpaDo
Language:R
zhongmicai/spage2vec
Language:Python
zhongmicai/spark
Language:R
zhongmicai/Spatial-Trans-Visual-Tool
Language:JavaScript
zhongmicai/SpatialDE
Language:Jupyter Notebook
zhongmicai/SpatialOmicsOverlay
Language:R
zhongmicai/SpaTrio
Language:Python
zhongmicai/stemfinder
Language:R1 0
zhongmicai/StereoCell
Language:Python
zhongmicai/Stereopy
multiple slice treatment, Spatial Transcriptomics Analysis in Python. Tissue segmentation, cell segmentation, cell correlation
Language:Jupyter Notebook1 0
zhongmicai/STOmics_SGAE
Language:Python1 0
zhongmicai/STOmics_StereoSiTE
Language:Jupyter Notebook1 0