zhongmicai
interested in evolution and functional genomics
Kunming institute of BotanyKunming Yunnan China
Pinned Repositories
awesome_single_cell
awesomeBiology
BioinformaticsWithPythonCookbook_2nd
Computer-ScienceCoursesWithVideoLectures
genome_evolution
GWASwithoutGenome
kmerGWAS, Identifying genetic variant underlying phenotypic variation in plants without complete genomes
Hic_tools_collection
HyPhy_analysis
Selection analyses, Evolutionary Hypothesis testing, relative evolutionary rate inference, Coevolutionary analysis, codon selection analyses, compartmentalization, data file tools, miscellaneous, model comparison, molecular clock, phylogeny reconstruction, positive selection, recombination, relative rate, relative ratio
ngsTools
Vcf2SiteFrequencySpectrum
vcf to site frequency spectrum (SFS) or joint SFS of more than one population from a VCF file
zhongmicai's Repositories
zhongmicai/bulk2space
zhongmicai/CCL-cGPS
A clinical genomics-guided prioritizing strategy enables accurately selecting proper cancer cell lines for biomedical research
zhongmicai/DeepGEM
zhongmicai/MINI-EX
Motif-Informed Network Inference based on single-cell EXpression data
zhongmicai/scCATCH_performance_comparison
zhongmicai/scDeepSort_performance_comparison
zhongmicai/scDisProcema
zhongmicai/scRank
zhongmicai/scTITANS
zhongmicai/spark
zhongmicai/SpatialDE
zhongmicai/Stereopy
multiple slice treatment, Spatial Transcriptomics Analysis in Python. Tissue segmentation, cell segmentation, cell correlation
zhongmicai/CellMatch_scCATCH
zhongmicai/FIST-nD
zhongmicai/GNTD
zhongmicai/ImSpiRE
zhongmicai/KANO
zhongmicai/mosaicatcher-pipeline
Structural variant calling from single-cell Strand-seq data
zhongmicai/scCrossTalk
zhongmicai/scDeepSort
zhongmicai/singleCelltoolPackages
zhongmicai/SpaDo
zhongmicai/spage2vec
zhongmicai/Spatial-Trans-Visual-Tool
zhongmicai/SpatialOmicsOverlay
zhongmicai/SpaTrio
zhongmicai/stemfinder
zhongmicai/StereoCell
zhongmicai/STOmics_SGAE
zhongmicai/STOmics_StereoSiTE