zocean

zocean's Stars

• kamranahmedse/developer-roadmap

  Interactive roadmaps, guides and other educational content to help developers grow in their careers.

  Language:TypeScript296k6.8k2.4k39k

• ossu/computer-science

  🎓 Path to a free self-taught education in Computer Science!

  172k5.8k64421.7k

• Developer-Y/cs-video-courses

  List of Computer Science courses with video lectures.

  67.1k1.9k1439.1k

• karpathy/LLM101n

  LLM101n: Let's build a Storyteller

  29.6k2.3k01.6k

• ddbourgin/numpy-ml

  Machine learning, in numpy

  Language:Python15.4k457503.7k

• iamtrask/Grokking-Deep-Learning

  this repository accompanies the book "Grokking Deep Learning"

  Language:Jupyter Notebook7.4k321501.6k

• Davidobot/BetterJoy

  Allows the Nintendo Switch Pro Controller, Joycons and SNES controller to be used with CEMU, Citra, Dolphin, Yuzu and as generic XInput

  Language:C#3.9k591.1k346

• DeepGraphLearning/LiteratureDL4Graph

  A comprehensive collection of recent papers on graph deep learning

  3.1k1919564

• ucg8j/awesome-dash

  A curated list of awesome Dash (plotly) resources

  Language:Python2.1k523259

• theislab/single-cell-tutorial

  Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

  Language:Jupyter Notebook1.4k45101457

• cmdcolin/awesome-genome-visualization

  A list of interesting genome browser or genome-browser-like implementations

  Language:TypeScript853289109

• wenxinxu/resnet-in-tensorflow

  Re-implement Kaiming He's deep residual networks in tensorflow. Can be trained with cifar10.

  Language:Python8282438276

• calico/basenji

  Sequential regulatory activity predictions with deep convolutional neural networks.

  Language:Python40030169122

• Genentech/gReLU

  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

  Language:Python22193723

• flekschas/regl-scatterplot

  Scalable WebGL-based scatter plot library build with Regl

  Language:JavaScript19499424

• hms-dbmi/hic-data-analysis-bootcamp

  Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.

  Language:Jupyter Notebook19226251

• popgenmethods/lecture_notes

  Lecture Notes on Computational and Mathematical Population Genetics

  18419015

• pinellolab/scATAC-benchmarking

  Benchmarking computational single cell ATAC-seq methods

  Language:Jupyter Notebook17681038

• mdozmorov/HiC_data

  A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.

  17313230

• keller-mark/awesome-biological-visualizations

  A list of web-based interactive biological data visualizations.

  1674017

• AlexandrovLab/SigProfilerExtractor

  SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

  Language:Python1532320951

• kundajelab/bpnet

  Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them

  Language:Jupyter Notebook141153934

• PoisonAlien/trackplot

  Generate IGV style locus tracks from bigWig files in R

  Language:R13833916

• marbl/ModDotPlot

  Language:Python11811209

• keiserlab/plaquebox-paper

  Repo for Tang et al, bioRxiv 454793 (2018)

  Language:Jupyter Notebook386525

• ZhuangLab/Chromatin_Analysis_2020_cell

  Source codes and example scripts for chromatin tracing projects in Zhuang lab

  Language:Jupyter Notebook25626

• Hughes-Genome-Group/deepHaem

  Implementation of a deep convolutional neural network for predicting chromatin features from DNA sequence

  Language:Python17216

• nucleome/nb-dispatch

  a super cross tab event dispatcher

  Language:JavaScript3100

• zocean/Norma

  Language:Python2303

• agalitsyna/DPDchrom_input_parser

  Language:Jupyter Notebook1200