--biasCorrect not recognised

[hector3500]

I am running salmon as part of a pipeline and this error message is being displayed:

running salmon quant...
Version Server Response: Not Found
exception : [unrecognised option '--biasCorrect']. Exiting.
pipeline failed at expression quantification!

Here are the options which the script uses:
salmon quant -t ${transcript_fa} ${ltype} -a ${rna_bam} -o ${sm_odir} -p $nproc --biasCorrect
check_file ${sm_out} "pipeline failed at expression quantification!"

I have the latest version of salmon installed.

[rob-p]

Hi @hector3500,

--biasCorrect is not a salmon flag. Instead, it provides the --seqBias and --gcBias flags.

--Rob