COMBINE-lab/salmon

Issues

• (sorry for repeated reference from discussion)

  #907 opened a year ago
  0

• Only 50% reads aligned on PE human mRNA stranded library

  #905 opened a year ago
  0

• Please make gencode SA files available

  #904 opened a year ago
  0

• Quantification in Alignment mode for Nanopore Data

  #903 opened a year ago
  2

• segmentation fault when skipQuant flag is set

  #902 opened a year ago
  0

• Mapping one organism from a mixed tissue sample

  #901 opened a year ago
  2

• View salmon quant output in a browser

  #900 opened a year ago
  1

• Salmon quant error in --ont mode (Bus error (core dumped)

  #898 opened a year ago
  0

• anaconda version of salmon outdated, missing decoys option

  #895 opened a year ago
  7

• Hi @Ray6283,

  #890 opened a year ago
  1

• (alevin) Specifying --read-geometry in paired-end samples

  #886 opened a year ago
  0

• Segmentation fault in salmon quant

  #881 opened a year ago
  4

• -seqbias | is it specific to random hexameric primers ?

  #880 opened a year ago
  4

• How to handle Multiplet data?

  #879 opened a year ago
  0

• missing flags for indropV2

  #878 opened a year ago
  4

• Inconsistency in salmon quant Documentation Regarding --eqclasses Option

  #877 opened a year ago
  2

• Seg Fault in salmon quant

  #876 opened a year ago
  2

• mapping features from chromium v2 10X library

  #875 opened a year ago
  0

• alevin handling of sublibrary BC in Parse data

  #874 opened a year ago
  4

• --biasCorrect not recognised

  #873 opened a year ago
  1

• 32-bit support?

  #872 opened a year ago
  0

• Installation of Salmon on M1 Mac

  #871 opened a year ago
  1

• salmon quant was invoked improperly. For usage information, try salmon quant --help Exiting.

  #870 opened a year ago
  2

• If this is a paired-end library, are you sure the reads are properly paired?

  #869 opened a year ago
  0

• Alevin failing to quantitate Split-seq reads

  #867 opened a year ago
  0

• fix cmake to find hts

  #866 opened a year ago
  3

• Errors in Salmon Indexing with --features Option

  #865 opened a year ago
  1

• CXXABI_1.3.11 and GLIBCXX_3.4.22 not found

  #864 opened a year ago
  1

• Salmon quant reports transcripts in BAM not found in FASTA, despite GFFREAD correction

  #863 opened a year ago
  2

• Salmon: rapidjson internal assertion failure: IsObject()

  #862 opened a year ago
  1

• Possible to add support for 10x VDJ?

  #861 opened a year ago
  2

• Compilation fails with "lto1: internal compiler error: Segmentation fault"

  #860 opened a year ago
  1

• Calculate differential splicing

  #859 opened a year ago
  1

• Hi, I am having issues with calculating the differential splicing and I kept getting this error message, even though all files required are uploaded. Could you please help me with this issue. The error message is below :

  #858 opened a year ago
  0

• Error in library(edgeR) - there is no package called 'edgeR'

  #855 opened 2 years ago
  2

• salmon quantify

  #854 opened 2 years ago
  2

• [error] Can't find left Boundary.

  #853 opened 2 years ago
  0

• Problem to interpret the output statistics of Salmon 1.10.1

  #852 opened 2 years ago
  0

• Version Server Response: Not Found when attempting a mapping based quantification

  #851 opened 2 years ago
  3

• Identifying sampletags in R2 sequence from Rhapsody

  #850 opened 2 years ago
  2

• Issue with the quant merge

  #849 opened 2 years ago
  0

• LIBTYPE question

  #848 opened 2 years ago
  0

• Can't run Salmon 1.8.0 for reads single-end

  #847 opened 2 years ago
  1

• Unit tests with `make test` not finding `libtbb.so.12`

  #845 opened 2 years ago
  2

• Read tracking in Salmon (alignment mode)

  #844 opened 2 years ago
  2

• replaced non-ACGT nucleotides

  #843 opened 2 years ago
  1

• Error in DGEList(counts = cnt, group = group) : non-numeric values found in counts

  #842 opened 2 years ago
  0

• GitHub: Binary for 0.10.1 missing

  #841 opened 2 years ago
  3

• same read files, but different most likely library type detected with different transcriptome

  #840 opened 2 years ago
  4

• IDT Targeted Panels

  #839 opened 2 years ago
  0