DongHRLZU

DongHRLZU's Stars

• samtools/samtools

  Tools (written in C using htslib) for manipulating next-generation sequencing data

  Language:C1.6k1001.3k581

• lh3/seqtk

  Toolkit for processing sequences in FASTA/Q formats

  Language:C1.4k62174307

• shenwei356/seqkit

  A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

  Language:Go1.3k27435160

• DerrickWood/kraken2

  The second version of the Kraken taxonomic sequence classification system

  Language:C++72730833273

• GoogleChromeLabs/chrome-for-testing

  Language:JavaScript7131810787

• BenLangmead/bowtie2

  A fast and sensitive gapped read aligner

  Language:C++67932432159

• voutcn/megahit

  Ultra-fast and memory-efficient (meta-)genome assembler

  Language:C++59737334135

• 1204244136/index-X

  禁书目录X系列，不一样的阅读体验！

  42016856

• LinuxStory/Advanced-Bash-Scripting-Guide-in-Chinese

  《Bash脚本进阶指南》第十次修订本中文版

  418450121

• shenwei356/taxonkit

  A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

  Language:Go380810030

• refresh-bio/KMC

  Fast and frugal disk based k-mer counter

  Language:C++2751021672

• jts/sga

  de novo sequence assembler using string graphs

  Language:C++2383312082

• fbreitwieser/krakenuniq

  🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results

  Language:C++2241616743

• yfukasawa/LongQC

  LongQC is a tool for the data quality control of the PacBio and ONT long reads.

  Language:C14617618

• jstjohn/SeqPrep

  Tool for stripping adaptors and/or merging paired reads with overlap into single reads.

  Language:C141183851

• MikkelSchubert/adapterremoval

  AdapterRemoval v2 - rapid adapter trimming, identification, and read merging

  Language:C++10475823

• tdwg/wgsrpd

  World Geographical Scheme for Recording Plant Distributions (WGSRPD)

  Language:HTML42111029

• MPI-BGC-Functional-Biogeography/rtry

  rtry: Preprocessing Plant Trait Data

  Language:R24302

• pontussk/PMDtools

  Compute postmortem damage patterns and decontaminate ancient genomes

  Language:Python15387

• BioGeoMacro/GIFT

  :package: R package to extract data from Global Inventory of Floras and Traits (GIFT)

  Language:R14491

• genomewalker/bam-filter

  A simple tool to calculate metrics from a BAM file and filter references with uneven coverages

  Language:Python10486

• miwipe/ngsLCA

  Language:C++93265

• bdesanctis/bamdam

  A post-mapping authentication toolkit for ancient metagenomics

  Language:Python6

• metaDMG-dev/metaDMG-core

  metaDMG

  Language:Python62195

• metaDMG-dev/metaDMG-cpp

  metaDMG-cpp

  Language:C++46182

• RBGKew/KewTreeOfLife

  Software to construct and analyse KewTreeOfLife (PAFTOL project)

  41001

• StefanKruse/R_Rarefaction

  R code for resampling and thus normalizing of count data to the minimum number of counts across a set of samples (e.g. sedaDNA sequence/pollen taxa counts per sample along a sediment core)

  Language:R310

• wyc661217/Arctic_eDNA_2021

  Language:R3201

• salanova-elliott/jokelvatnet_data

  Python notebook to filter and format the metabarcoding data from Jøkelvatnet

  Language:Jupyter Notebook10

• Y-Lammers/MetabarcodingFilter

  Additional metabarcoding filters to correct for tag switching and polymerase biases

  Language:Python1200