Issues
- 0
Inconsistent default value for sga assemble -l
#169 opened by Griffan - 5
installation problem with google-sparsehash
#164 opened by AndreaQ7 - 2
graph-concordance documentation unclear
#168 opened by d-cameron - 0
sga-preqc-report.py Unable to parse the pattern
#167 opened by Sven-Winter - 3
sga preqc findSingleCopyPeak finds the wrong peak
#166 opened by melop - 0
running problems with graph-diff
#165 opened by MingjingKang - 7
configure not working
#114 opened by Sameth - 6
configure forces -std=c++98 but that should be moved to relevant Makefiles or sga code adjusted
#156 opened by mmokrejs - 0
OverlapProcess.h Missing
#163 opened by cgroza - 6
cannot configure with bamtools
#117 opened by ArielPaulson - 3
substring remaining after rmdup
#162 opened by bvalot - 0
index for large .fastq file
#161 opened by sunsac - 1
- 1
Python 2 is end of life on 2020-01-01
#158 opened by mr-c - 0
- 3
compilation errors with std::__cxx11
#155 opened by lwl1112 - 16
Does not build using gcc 6
#106 opened by tillea - 2
- 0
sga-astat module not found
#153 opened by pnatsi - 1
- 12
celegans.pe file not found
#151 opened by pursue9190 - 3
collect2: error: ld returned 1 exit status
#128 opened by mictadlo - 13
Error at `make`: VariantIndex.cpp:89:16: error: call to 'abs' is ambiguous
#141 opened by evanbiederstedt - 3
sga-bam2de.pl returns empty .de file
#142 opened by flopezo - 8
configure issues
#130 opened by irenatfh - 1
Blank sections in preqc results
#140 opened by genes-and-genomes - 0
- 0
CFFLAGS & CXXFAGS
#137 opened by nottwy - 2
Error: Duplicate read ID - sga-bam2de.pl
#136 opened by a-lud - 0
sga scaffolding and mate-pair orientation
#135 opened by edu3716 - 0
sga rmdup vs sga filter --no-kmer-check.
#134 opened by yeban - 1
- 2
sga assemble reaches edge limit
#132 opened by johnomics - 11
sga index segfault with large values of -d
#131 opened by sjackman - 18
scaffold2fasta: Assertion `expectedOverlap < (int)contigString.length()' failed
#125 opened by sjackman - 0
fastq files produced by 'sga correct' not always match the length of the reads
#129 opened by mictadlo - 2
pre-process
#127 opened by hermeseduardo - 4
0.10.14 compilation error
#122 opened by wookietreiber - 2
Samtools problem in sga-bam2de.pl
#118 opened by Katospiegel - 0
DistanceEst --mean
#124 opened by sjackman - 5
sga-align: prepareReads: Cannot parse record
#121 opened by sjackman - 4
- 0
Missing scripts in bin directory
#116 opened by jsmedmar - 0
v0.10.14 -DistanceEst retuns empty .de file
#115 opened by DHatziioanou - 7
Util/ClusterReader.cpp implicit type conversion an issue with compilers with C++11 as default language standard
#108 opened by SHuang-Broad - 0
Slight confusion in example scripts, and sga-align not getting installed
#113 opened by vuw-ecs-kevin - 0
- 0
- 2
Invalid arguments to legend in sga-preqc-report.py
#105 opened by avilella - 0
read and quality length is not the same after EC
#107 opened by starnight0