EttoreRocchi

EttoreRocchi's Stars

• deepseek-ai/DeepSeek-V3

  Language:Python94.9k74449515.3k

• EpistasisLab/tpot

  A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

  Language:Jupyter Notebook9.9k2869281.6k

• rdkit/rdkit

  The official sources for the RDKit library

  Language:HTML2.9k773.4k906

• fairlearn/fairlearn

  A Python package to assess and improve fairness of machine learning models.

  Language:Python2k37498452

• jundongl/scikit-feature

  open-source feature selection repository in python

  Language:Python1.5k6056442

• bbuchfink/diamond

  Accelerated BLAST compatible local sequence aligner.

  Language:C++1.1k37725181

• rpy2/rpy2

  Interface to use R from Python

  Language:Python607795176

• rrwick/Bandage

  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

  Language:C++60736113101

• tseemann/abricate

  :mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

  Language:Perl3972820495

• biobakery/MetaPhlAn

  MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

  Language:Python3311920788

• chklovski/CheckM2

  Assessing the quality of metagenome-derived genome bins using machine learning

  Language:Scilab202711926

• chl8856/DeepHit

  DeepHit: A Deep Learning Approach to Survival Analysis with Competing Risks

  Language:Python1963982

• biobakery/humann

  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

  Language:Python188164563

• sanger-pathogens/ariba

  Antimicrobial Resistance Identification By Assembly

  Language:Python1732112655

• biobakery/phylophlan

  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

  Language:Python137511633

• biobakery/kneaddata

  Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

  Language:Python11772131

• vanderschaarlab/temporai

  TemporAI: ML-centric Toolkit for Medical Time Series

  Language:Python11376624

• biobakery/biobakery_workflows

  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.

  Language:Python11072734

• erwanlemerrer/awesome-audit-algorithms

  A curated list of algorithms and papers for auditing black-box algorithms.

  991419

• kamilest/conformal-rnn

  Implementation for Stankevičiūtė et al. "Conformal time-series forecasting", NeurIPS 2021.

  Language:Jupyter Notebook743215

• autogluon/fev

  Forecast evaluation library

  Language:Python65517

• nlmixr2/nlmixr2

  nlmixr2

  Language:TeX5251043

• pietrobarbiero/logic_explained_networks

  Logic Explained Networks is a python repository implementing explainable-by-design deep learning models.

  Language:Python492310

• BorgwardtLab/NeuralWalker

  Official Pytorch implementation of NeuralWalker

  Language:Python29203

• JonathanCrabbe/Simplex

  This repository contains the implementation of SimplEx, a method to explain the latent representations of black-box models with the help of a corpus of examples. For more details, please read our NeurIPS 2021 paper: 'Explaining Latent Representations with a Corpus of Examples'.

  Language:Python24328

• BorgwardtLab/reComBat

  reComBat package to correct batch effects

  Language:Jupyter Notebook12153

• aryan-jadon/Synthetic-Data-Generation-in-Healthcare-Using-Generative-AI

  This repository contains the summary of the research papers and book chapters referenced in our research paper - Leveraging Generative AI Models for Synthetic Data Generation in Healthcare: Balancing Research and Privacy

  10103

• billmannlab/pyBaCoN

  Python version of BaCoN

  Language:Python3220

• ihmeuw-msca/mrtool

  Featured Nonlinear Mixed effects Models

  Language:Python3267

• Nico-Curti/Software-Computing

  Software and Computing for Applied Physics - University of Bologna

  Language:HTML220