MVesuviusC/primerTree
PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs
RGPL-2.0
Issues
- 0
Error in names(taxid) <- gid : 'names' attribute [2] must be the same length as the vector [1]
#62 opened by z-pyyyy - 0
- 0
ambiguous results from *parse_primer_hits*
#60 opened by Sigma88 - 4
On the construction of Mammmal 16S primer tree
#59 opened by Minhuidong - 1
- 0
extra options
#58 opened by perrochico-madefoker - 4
primerTree is broken
#51 opened by cement-head - 6
- 9
Error in curl
#55 opened by saulobritto - 2
error in calc_rank_dist_ave
#54 opened by babinecha - 2
alternative NCBI database
#53 opened by babinecha - 7
- 1
Improvement modifications from David
#6 opened by jimhester - 4
Bad Request (HTTP 400)
#52 opened by babinecha - 11
Is there a way to bypass the NCBI rate-limiting e-utilities queries, causing HTTP 429 error?
#35 opened by ucbtmae - 2
- 4
Custom database for blast
#42 opened by alexandracarrier - 1
Cant get the pdf to plot
#48 opened by karissa-b - 1
Error in data.frame(gi = names(taxids), taxId = taxids, stringsAsFactors = FALSE)
#49 opened by saulobritto - 4
- 2
clustal_options variable for filter_seqs
#34 opened by alexpiper - 6
- 3
Add matt to authors
#47 opened by jimhester - 1
- 3
- 4
- 0
- 0
- 0
Problem with calc_rank_dist_ave, Error in Ops.factor(melted_sub$rank1, melted_sub$rank2) : level sets of factors are different
#37 opened by atrujillog - 8
Error in curl::handle_setform: Insupported value type for form field 'PRIMER_LEFT_INPUT'
#28 opened by RaSieb - 2
Warning messages: 1: In GET_retry & Error in `[.data.frame`(hits, location_columns) : undefined columns selected
#26 opened by MatthiasZFMK - 2
latest version of XML issue
#27 opened by PWSmit - 0
search_primer_pair fails in the clustalo stage
#25 opened by IdoBar - 5
- 2
- 4
- 1
- 1
primerTree polls NCBI too frequently
#24 opened by taltman - 5
Error in UseMethod("xpathApply")
#20 opened by cruckert - 21
Control size of blast hits?
#7 opened by MVesuviusC - 3
Failure with ggplot2 2.0.0
#16 opened by hadley - 3
failure to run with specific primer set
#12 opened by MVesuviusC - 6
Error : cannot allocate vector of size 3.2 Gb
#10 opened by lyy005 - 0
get_taxonomy()
#9 opened by lyy005 - 2
How can I get sequences from primerTree
#8 opened by lyy005 - 0
search_primer_pair() is non-functional
#5 opened by MVesuviusC - 0
host taxid included
#1 opened by MVesuviusC - 0