Mizzou-CBMI/COSMOS2

Issues

• Mount custom volumes to Docker image

  #152 opened 2 years ago by valeandri
  1

• pythong instead of python in the README

  #151 opened 3 years ago by njbernstein
  1

• SQLAlchemy 1.4 breaks Cosmos

  #149 opened 3 years ago by daveeloo
  0

• Community suggestion

  #150 opened 3 years ago by loganylchen
  1

• Update visualization of DAGs

  #46 opened 4 years ago by egafni
  0

• Add Stage Status "Finished, but incomplete"

  #26 opened 4 years ago by egafni
  0

• reset stage finished_on

  #28 opened 4 years ago by egafni
  0

• empty dag hangs forever

  #32 opened 4 years ago by egafni
  1

• Specify Environment Variables for aws batch

  #143 opened 4 years ago by egafni
  5

• Speed up reaping of GridEngine Jobs

  #71 opened 4 years ago by egafni
  0

• runweb should be an optional extra

  #108 opened 4 years ago by ahvigil
  1

• SLURM example

  #142 opened 4 years ago by loganylchen
  1

• CWL support for COSMOS2

  #45 opened 5 years ago by pvanheus
  4

• Kubernetes support in COSMOS2

  #113 opened 5 years ago by SSunkara
  1

• latest COSMOS release breaks python 2 compatibility

  #118 opened 5 years ago by ahvigil
  1

• official website not found

  #112 opened 6 years ago by JakLiao
  0

• mysql error

  #95 opened 6 years ago by loganylchen
  3

• question about the setup of cosmos on computer cluster

  #37 opened 6 years ago by aurelBZH
  1

• How to change the `log` dir

  #88 opened 6 years ago by loganylchen
  4

• How to change `_default_task_log_output_dir`

  #85 opened 7 years ago by loganylchen
  1

• Cosmos examples fail on a fresh install (conda, both python3 and python2.7)

  #83 opened 7 years ago by lucventurini
  9

• cosmos: error: too few arguments error even after setting

  #82 opened 7 years ago by man4ish
  1

• Examples and tests fail on fresh install

  #80 opened 7 years ago by 1pakch
  0

• Clarification on slurm tasks in the workflow

  #72 opened 7 years ago by RML-Admin
  5

• All Licenses Mentioned

  #59 opened 8 years ago by doctormo
  2

• question about project with multiple workflow

  #36 opened 8 years ago by aurelBZH
  1

• Stage cycles throw a non-descriptive error

  #35 opened 8 years ago by egafni
  1

• Extract task results within workflow

  #57 opened 8 years ago by kmhernan
  1

• PBS uses string job ids

  #54 opened 8 years ago by egafni
  0

• execution of python code after the end of a cosmos task

  #50 opened 8 years ago by aurelBZH
  1

• tools and variable

  #49 opened 9 years ago by aurelBZH
  1

• Documentation offline ?

  #30 opened 9 years ago by kevintc
  3

• compatibility problem between pop_execution_arg and cosmos.start()

  #33 opened 9 years ago by aurelBZH
  2

• problem of compatibility between pygraphviz and cosmos

  #34 opened 9 years ago by aurelBZH
  5

• problem with the second example?

  #31 opened 9 years ago by aurelBZH
  1

• File download from a wide range of sources

  #29 opened 9 years ago by yassineS
  3

• Error: Internal Server Error on Indel Realigner intermittently

  #27 opened 9 years ago by Double-O-ren
  7

• Generated "command_attempt1.bash" Script does not enter into output directory

  #15 opened 9 years ago by MarcusWalz
  4

• persist=False has no effect

  #17 opened 9 years ago by sa9
  12

• How to limit the number of running tasks when drm=='local'?

  #20 opened 9 years ago by sa9
  10

• Process stops in the middle, no suitable queues

  #24 opened 9 years ago by Double-O-ren
  5

• dna-seq is not a valid choice on genomekey v 0.1.0

  #25 opened 9 years ago by Double-O-ren
  1

• Examples

  #16 opened 9 years ago by sa9
  1

• Issue launching main.py

  #14 opened 9 years ago by manonSourdeix
  8

• Setup Readthedocs Webhooks

  #13 opened 10 years ago by jakirkham
  10

• Trying to start cosmos shell

  #8 opened 10 years ago by jakirkham
  4

• setup.py cleanup

  #9 opened 10 years ago by jakirkham
  0

• Doc cleanup

  #11 opened 10 years ago by jakirkham
  0

• 1.0.15, cosmos/graph/draw.py: 'DiGraph' object has no attribute 'layout'

  #6 opened 10 years ago by crl9k
  1

• Document the web-interface

  #5 opened 10 years ago by yassineS
  0