Pinned issues
Issues
- 9
- 9
- 9
problem with configuration
#1650 opened - 2
LFQ-phospho - sequence
#1649 opened - 2
- 20
SpecLib Generation Issue
#1647 opened - 2
Change UI Scaling
#1646 opened - 2
- 23
- 7
How to match Chromatogram peak with Protein ID?
#1643 opened - 5
Instrument not detected, how to specify?
#1642 opened - 1
Summary table-like output for FragPipe
#1641 opened - 8
Incorrect settings broke PTMProphet
#1639 opened - 5
FP 22.0, plexDIA & MSBooster
#1638 opened - 4
MS1 quantitation IonQuant error
#1637 opened - 7
SpecLibGen fails in FragPipe 22.0; "A module that was compiled using NumPy 1.x cannot be run in NumPy 2.0.0"
#1636 opened - 1
A user thought there was a small bug in the latest version of fragpipe, but actually there wasn't
#1635 opened - 1
SaintExpress Analysis after GPF-DIA?
#1634 opened - 3
- 4
Downstream SAINTexpress non-zero exit code
#1632 opened - 1
- 3
- 3
NoSuchMethodError due to messed up files
#1629 opened - 5
Site specific variable mod search
#1628 opened - 4
- 4
- 2
FragPipe 22.0 requires EasyPQP 0.1.44+
#1625 opened - 1
Group FDR
#1624 opened - 8
- 4
- 1
- 7
Python Version
#1620 opened - 1
Combining results from different workflows
#1619 opened - 1
- 4
No identifications for ETCID?
#1617 opened - 7
- 2
MSFragger Error: java.util.concurrent.ExecutionException: java.lang.OutOfMemoryError: Java heap space
#1615 opened - 3
Process 'MSBooster' finished, exit code: 1 Process returned non-zero exit code, stopping
#1614 opened - 4
- 8
- 4
- 4
Peaks with unreasonable large mz broke MSFragger
#1610 opened - 40
Can the fragpipe analyze the dimethylation-peptides?
#1609 opened - 6
Process 'WriteSubMzml' finished, exit code: 1
#1608 opened - 2
failed to generate skyline document with v22.0 because the users didn't run any other modules
#1607 opened - 14
Fragpipe v22.0 error with DIA-PASEF file
#1606 opened - 2
- 2
- 7
Lowess fraction config
#1603 opened - 14
Skyline output folder empty
#1602 opened