Paururo
I am conducting in-depth genetic research on two of the world's most lethal pathogens: SARS-CoV-2 and Mycobacterium tuberculosis.
@PathoGenOmics-LabSpain
Paururo's Stars
rclone/rclone
"rsync for cloud storage" - Google Drive, S3, Dropbox, Backblaze B2, One Drive, Swift, Hubic, Wasabi, Google Cloud Storage, Azure Blob, Azure Files, Yandex Files
awesome-lists/awesome-bash
A curated list of delightful Bash scripts and resources.
tidyverse/ggplot2
An implementation of the Grammar of Graphics in R
wkentaro/gdown
Google Drive Public File Downloader when Curl/Wget Fails
nextflow-io/nextflow
A DSL for data-driven computational pipelines
lh3/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
bbuchfink/diamond
Accelerated BLAST compatible local sequence aligner.
sylabs/singularity
SingularityCE is the Community Edition of Singularity, an open source container platform designed to be simple, fast, and secure.
bactopia/bactopia
A flexible pipeline for complete analysis of bacterial genomes
hodcroftlab/covariants
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
lh3/miniprot
Align proteins to genomes with splicing and frameshift
JamesHWade/gpttools
gpttools extends gptstudio for package development to help you document code, write tests, or even explain code
gaospecial/ggVennDiagram
A 'ggplot2' implement of Venn Diagram.
a-slide/pycoQC
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
Xinglab/rmats-turbo
KlausVigo/phangorn
Phylogenetic analysis in R
AstrobioMike/GToTree
A user-friendly workflow for phylogenomics
KosinskiLab/AlphaPulldown
tycho-kirchner/shournal
Log shell-commands and used files. Snapshot executed scripts. Fully automatic.
lh3/pangene
Constructing a pangenome gene graph
attractivechaos/k8
k8 Javascript shell
wdecoster/chopper
fwhelan/coinfinder
A tool for the identification of coincident (associating and dissociating) genes in pangenomes.
jokergoo/rGREAT
GREAT Analysis - Functional Enrichment on Genomic Regions
corneliusroemer/pango-sequences
Consensus sequences for each Pango lineage
flemingtonlab/SpliceTools
morichardson/ORFeus
nathan-d-hicks/phyOverlap
Method for testing for phylogenetic overlap of mutations in a gene and a phenotype of interest.
PathoGenOmics-Lab/mycolorsTB
R Color package for Mycobacterium tuberculosis complex
evolbioinfo/condor-analysis
Files and scripts from ConDor analysis