pierrebarbera/epa-ng

Issues

• Help on Aborted (core dumped) message

  #48 opened 2 years ago by pterzian
  2

• Placements sensitive to outlier sequences?

  #33 opened 5 years ago by gavinmdouglas
  3

• question on comparison with RAxML-epa

  #51 opened a year ago by jianshu93
  5

• MacOS M1 neon support

  #49 opened a year ago by jianshu93
  5

• Tree Log-Likelihood -INF Error

  #50 opened a year ago by kawabata-tomoko
  4

• FastTree

  #47 opened 2 years ago by atoselan
  4

• How to convert the epa results (jplace) to the newick format?

  #46 opened 2 years ago by Bin-Ma
  3

• Hello,I find issue running this program

  #39 opened 2 years ago by Kangjinkyeong
  3

• error when doing the final epa-ng placement

  #40 opened 2 years ago by AnaMariaCabello
  11

• model info error

  #45 opened 2 years ago by RachelDanie
  2

• Compilation error on Bioconda

  #43 opened 3 years ago by dpryan79
  4

• Treeparsing error

  #42 opened 3 years ago by csanchis
  6

• Support for QMaker and nQMaker from IQ-TREE?

  #41 opened 3 years ago by michoug
  1

• Zero-length branches altered

  #38 opened 3 years ago by davidemms
  7

• Error running this command

  #37 opened 3 years ago by edmundtayzy
  5

• Issue with building from source: ld throws errors

  #36 opened 4 years ago by FMKerckhof
  4

• PLL assertion error

  #35 opened 4 years ago by cmorganl
  3

• -INF logl at branch 0 error

  #34 opened 4 years ago by Saellenee
  3

• The model parameters under data partitioning

  #32 opened 5 years ago by pyspider
  7

• Intuition for a common taxonomic-assignment procedure

  #31 opened 5 years ago by adriaaula
  3

• Memory management strategy for large trees / alignments

  #30 opened 5 years ago by pierrebarbera
  0

• Address issues with heuristic placement

  #29 opened 5 years ago by pierrebarbera
  0

• Provide test scripts / sanity checking for jplace

  #6 opened 7 years ago by pierrebarbera
  1

• Split command using fasta files

  #28 opened 6 years ago by koopkaup
  2

• Avoid duplicate work

  #4 opened 6 years ago by lczech
  11

• Accept more ML models

  #3 opened 6 years ago by pierrebarbera
  0

• A bit unclear model notation

  #23 opened 6 years ago by novigit
  2

• epa-ng available on Homebrew through brewsci/bio

  #27 opened 6 years ago by gaberoo
  2

• Internal node labels disappear from reference tree

  #26 opened 6 years ago by aaronmussig
  5

• Segmentation fault when processing a large number of sequences

  #24 opened 6 years ago by apcamargo
  6

• Setting random seed

  #25 opened 6 years ago by gavinmdouglas
  2

• Conda installation syntax error

  #22 opened 6 years ago by gavinmdouglas
  5

• unimplemented pure virtual method error

  #18 opened 6 years ago by gavinmdouglas
  4

• src/core/pll/pll_util.cpp compile error: ‘tie’ is not a member of ‘std’

  #21 opened 6 years ago by balabanmetin
  1

• Utilize sequence multiplicities

  #5 opened 7 years ago by lczech
  0

• Add checkpointing

  #17 opened 7 years ago by pierrebarbera
  0

• Error when compiling MPI enabled version

  #19 opened 6 years ago by koopkaup
  13

• Fatal, silent, error under MPI since version v0.3.0

  #20 opened 6 years ago by pierrebarbera
  0

• Preserve Rooting for rooted input trees

  #15 opened 6 years ago by pierrebarbera
  1

• Add "automake" and "autoconf" libraries reference in README.md

  #7 opened 7 years ago by ramabit
  1

• Add Amino Acid data support back in

  #1 opened 7 years ago by pierrebarbera
  2

• Accept RAxML-ng style model descriptor

  #2 opened 7 years ago by pierrebarbera
  1

• Segfault with large query volume under MPI

  #9 opened 7 years ago by pierrebarbera
  4

• RNA data causes error with heuristic

  #14 opened 7 years ago by pierrebarbera
  2

• Add a function to convert combined phylip to separated reference and query MSA

  #16 opened 7 years ago by pierrebarbera
  2

• Version option broken

  #13 opened 7 years ago by gavinmdouglas
  1

• Treeparsing error

  #12 opened 7 years ago by gavinmdouglas
  5

• I cannot find list of forbidden character for header of fasta

  #11 opened 7 years ago by svicario
  2

• cannot compile libpll

  #10 opened 7 years ago by svicario
  3