SilasK

SilasK's Stars

• Textualize/rich

  Rich is a Python library for rich text and beautiful formatting in the terminal.

  Language:Python50.3k5381.4k1.8k

• streamlit/streamlit

  Streamlit — A faster way to build and share data apps.

  Language:Python36.7k3234.7k3.2k

• pomber/git-history

  Quickly browse the history of a file from any git repository

  Language:JavaScript13.6k135117536

• mwaskom/seaborn

  Statistical data visualization in Python

  Language:Python12.8k2632.6k1.9k

• networkit/networkit

  NetworKit is a growing open-source toolkit for large-scale network analysis.

  Language:C++77628339231

• crazyhottommy/bioinformatics-one-liners

  Bioinformatics one liners from Ming Tang

  460190128

• Miksus/red-mail

  Advanced email sending for Python

  Language:Python40064031

• YongxinLiu/EasyAmplicon

  Easy Amplicon data analysis pipeline

  Language:HTML271417104

• wwood/kingfisher-download

  Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.

  Language:Python25273438

• crazyhottommy/The-world-of-faculty

  resources for faculty

  20810026

• chklovski/CheckM2

  Assessing the quality of metagenome-derived genome bins using machine learning

  Language:Scilab188811222

• satijalab/azimuth

  A Shiny web app for mapping datasets using Seurat v4

  Language:HTML118917834

• bhattlab/MGEfinder

  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.

  Language:Python11435116

• neherlab/pangraph

  A bioinformatic toolkit to align genome assemblies into pangenome graphs

  Language:Julia927237

• philippbayer/submission_checklist

  A checklist to help you avoid all those minor errors when submitting a scientific manuscript

  863012

• rhysnewell/aviary

  A hybrid assembly and MAG recovery pipeline (and more!)

  Language:Python85512413

• rrwick/Minipolish

  A tool for Racon polishing of miniasm assemblies

  Language:Python738127

• andrewheiss/portable-pandoc-magic

  Self-contained example of using pandoc + a Makefile to convert from (R)md to html/tex/docx

  Language:TeX63608

• leylabmpi/Struo2

  Scalable creating/updating of metagenome profiling databases

  Language:Jupyter Notebook595488

• LaboratorioBioinformatica/MARVEL

  MARVEL: Metagenomic Analyses and Retrieval of Viral ELements

  Language:Python524616

• agmcfarland/r_phylogenetics_worshop

  Using ggtree to build phylogenetic trees

  Language:HTML454210

• flylo/g-means

  Language:Python342114

• yunguan-wang/SPROD

  SPROD: Spatial expression profiling de-noising

  Language:Python336154

• songweizhi/MarkerMAG

  Linking MAGs with 16S rRNA marker genes

  Language:Python24382

• krisrs1128/microbiome_plvm

  Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."

  Language:R21303

• jmonlong/pangenome-evaluation

  Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map

  Language:Python10510

• trajkovski-lab/CMMG

  Comprehensive mouse gut metagenome collection

  Language:Jupyter Notebook8222

• s-weigand/trigger-mybinder-build

  Github action to trigger a build on https://mybinder.org/

  Language:TypeScript7343

• borenstein-lab/empanada

  empanada is a tool for evidence-based assignment of genes to pathways in metagenomic data

  Language:Python3632

• ctb/magsearch

  Workflow and config files for searching (very) large public databases with sourmash sketches

  Language:Standard ML328