TranslatorSRI/NameResolution

Issues

• ENSEMBL:ENSDARG00000111928 is missing

  #101 opened a year ago by gaurav
  3

• Provide evidence that NameRes can reliably support 20 sequential queries with a maximum of 10 seconds pause between each query (our current goal for performance in the short term)

  #94 opened a year ago by gaurav
  0

• Upgrade Solr to 9.5

  #147 opened 5 months ago by gaurav
  0

• Hyphen processing still a bit dodgy, possibly because of our choice of tokenizer

  #146 opened 5 months ago by gaurav
  0

• Brand Names? ®

  #145 opened 5 months ago by GitHubbit
  0

• Figure out how to reduce boosts on repeated terms

  #144 opened 7 months ago by gaurav
  0

• "Bone" works well when autocomplete=true but breaks when autocomplete=false

  #142 opened 8 months ago by gaurav
  0

• Can we incorporate hierarchy information somehow?

  #141 opened 8 months ago by gaurav
  0

• Lookup for "diabetes type ..." takes more than a minute, and gives a wrong result

  #140 opened 8 months ago by vemonet
  1

• How do you get synonyms JSON file from the download TSV files?

  #137 opened 8 months ago by vemonet
  2

• Add LICENSE to NameRes

  #138 opened 8 months ago by gaurav
  1

• Rename `/reverse_lookup?curies=X` to `/synonyms?preferred_curie=X`

  #136 opened 8 months ago by gaurav
  0

• We don't do a good job on depression

  #135 opened 8 months ago by gaurav
  0

• Slow performance with short words in search query

  #107 opened 10 months ago by EvanDietzMorris
  1

• Rename to Name Resolver to be consistent

  #128 opened 9 months ago by gaurav
  0

• Figure out some way to use UMLS properly in search results

  #111 opened 10 months ago by gaurav
  0

• Add support for sending a batch of queries to NameRes simultaneously

  #110 opened 10 months ago by gaurav
  0

• How to deal with conflation in NameRes

  #87 opened a year ago by gaurav
  0

• "acp-044 dose a" causes timeout

  #95 opened a year ago by DnlRKorn
  0

• Afamelanotide doesn't map to correct PubChem Identifier

  #100 opened a year ago by DnlRKorn
  1

• Improve incomplete matches

  #97 opened a year ago by gaurav
  0

• `SOX` returns a lot of non-human genes

  #92 opened a year ago by gaurav
  0

• Figure out some way to document the dataUrl being used for a NameLookup instance

  #132 opened 9 months ago by gaurav
  0

• Rat v rats

  #127 opened 10 months ago by cbizon
  0

• Duplicated results

  #126 opened 10 months ago by cbizon
  0

• Alkaloid gives a good answer, alkaloids does not (getting hung up on an -s)

  #125 opened 10 months ago by cbizon
  0

• Use clique size in scoring?

  #124 opened 10 months ago by cbizon
  0

• Consider different autocomplete blocklists for different MVPs

  #120 opened 10 months ago by gaurav
  0

• Update NameLookup Jupyter Notebook and write some Translator-specific documentation

  #133 opened 9 months ago by gaurav
  0

• Searching for nothing actually searches for "OR"

  #131 opened 9 months ago by gaurav
  0

• Error on reverse lookup for PUBCHEM.COMPOUND:107526

  #129 opened 9 months ago by YaphetKG
  0

• Add Jaegar tracking in NameRes

  #105 opened 9 months ago by gaurav
  0

• Chemical synonym not recognized

  #122 opened 10 months ago by karafecho
  2

• Identify terms in HPO that need to be blocked so we can allow them in MVP1

  #93 opened 10 months ago by gaurav
  1

• Improve matching to be better at finding terms that are arranged differently

  #96 opened a year ago by gaurav
  0

• Figure out why we're getting "mongolism" as a synonym of Down syndrome and remove it

  #103 opened a year ago by gaurav
  0

• Synonym download target in data-loading Makefile doesn't include mkdir

  #106 opened 10 months ago by gaurav
  0

• Add integration tests and index-wide tests

  #112 opened 10 months ago by gaurav
  1

• Provide an option for NameRes to turn off incomplete matches for non-autocomplete applications

  #108 opened 10 months ago by gaurav
  0

• Prove that NameRes can sustain 20 sequential queries with a maximum of 10 seconds pause between them

  #113 opened 10 months ago by gaurav
  1

• Return scores from Solr in NameRes results

  #109 opened 10 months ago by gaurav
  0

• Consider whether we should do something about deafness

  #104 opened 10 months ago by gaurav
  1

• Docetaxel Chembl term getting mapped to Docetaxel Trihydrate Pubchem

  #99 opened a year ago by DnlRKorn
  2

• Reverse lookup GET endpoint treats string as a list

  #98 opened a year ago by YaphetKG
  0

• 403 Forbidden error with certain search strings in new Name Resolver

  #84 opened a year ago by CaseyTa
  1

• Solr prefers longer terms instead of shorter terms

  #85 opened a year ago by gaurav
  1

• Make sure we support gene names with non-alphanumeric characters

  #86 opened a year ago by gaurav
  1

• "Angiotensin II" finds angiotensin as the first match

  #90 opened a year ago by gaurav
  0

• PUBCHEM.COMPOUND:5743 ("Dexamethasone") is missing after drug conflation

  #91 opened a year ago by gaurav
  0

• Add support for CURIE suffix sorting for non-numerical codes

  #88 opened a year ago by gaurav
  0