a-h-b/dadasnake

Issues

• Feature request / general question re: parameter sweeps for DADA2

  #20 opened 3 years ago by jcmcnch
  2

• reverse complement code is wrong in `cutadapt.smk` and `cutadapt.single.smk` (solution provided)

  #40 opened 6 months ago by ppreshant
  1

• Downsampling

  #41 opened 4 months ago by juismo
  0

• 16S run error

  #39 opened 7 months ago by sanche27
  3

• Question on representative sequences

  #38 opened a year ago by juismo
  2

• Error in rule picrust2

  #37 opened a year ago by bheimbu
  3

• ITSxpress support

  #36 opened a year ago by eperezv
  1

• Nanopore data

  #22 opened 2 years ago by thierryjanssens
  7

• WorkflowError: File reporting/primerNumbers_perLibrary.tsv marked for report but does not exist.

  #33 opened 2 years ago by tboonf
  7

• Failed "optional test run" - Step 7 of Install

  #34 opened 2 years ago by jonwhit
  4

• NCBI BLAST nt database configuration with dadasnake: Example config.yaml files for use with BLAST

  #35 opened 2 years ago by jonwhit
  2

• install instructions using cluster snakemake module

  #29 opened 2 years ago by bishopia
  1

• Initializing dada2_env.yml failed

  #30 opened 2 years ago by Pawelco2
  1

• mothur database issue

  #26 opened 2 years ago by splaisan
  2

• Runtime of 120 hours in some rules

  #28 opened 2 years ago by velma-te-a
  1

• error: "Could not create conda environment from ... "

  #27 opened 3 years ago by gljessen
  6

• complaining about GB locale

  #25 opened 3 years ago by splaisan
  10

• Multiple cores when using option -l

  #23 opened 3 years ago by thierryjanssens
  1

• Visualize DAG

  #24 opened 3 years ago by thierryjanssens
  5

• multiple primer sets

  #21 opened 3 years ago by a-h-b
  3

• submitting to cluster not working

  #19 opened 3 years ago by vmkhot
  6

• Multiple primers per sample

  #11 opened 4 years ago by Fred-White94
  8

• Test run fail

  #18 opened 3 years ago by liaochen1988
  2

• Workflow error

  #15 opened 3 years ago by Sbsten
  24

• VARIABLE_CONFIG?

  #17 opened 3 years ago by marwa38
  2

• Node selection Slurm with dadasnake wrapper

  #16 opened 3 years ago by Fred-White94
  16

• Slurm Latency Issues - how to add --latency-wait into config

  #13 opened 4 years ago by Fred-White94
  2

• Setup and cutadapt cyclic dependency issue

  #12 opened 4 years ago by Fred-White94
  1

• snakemake: error: argument --configfile: expected one argument

  #10 opened 4 years ago by anilchauhanhp9
  24

• use snakemake wrappers and/or contribute to Snakemake workflows

  #9 opened 4 years ago by dlaehnemann
  3

• Within-run pooling

  #7 opened 4 years ago by vmikk
  4

• Rule `dada_dadaSingle` works only in a single-thread

  #6 opened 4 years ago by vmikk
  5

• pygments.util.ClassNotFound: no lexer for alias None found - bug or documention

  #5 opened 4 years ago by osilander
  4

• catch error in blast rule if no sequences are left after classification

  #4 opened 5 years ago by a-h-b
  0

• make blast for all OTUs an option

  #3 opened 5 years ago by a-h-b
  0

• Add ITSx result to table if taxonomy isn't based on it.

  #2 opened 5 years ago by a-h-b
  0

• add rule to make blast DBs

  #1 opened 5 years ago by a-h-b
  0