ababaian

ababaian's Stars

• alshedivat/al-folio

  A beautiful, simple, clean, and responsive Jekyll theme for academics

  Language:HTML10.7k2455111k

• insanum/gcalcli

  Google Calendar Command Line Interface

  Language:Python3.3k77559311

• pachterlab/gget

  🧬 gget enables efficient querying of genomic reference databases

  Language:Python932116674

• steineggerlab/foldseek

  Foldseek enables fast and sensitive comparisons of large structure sets.

  Language:C7801932099

• b2a3e8/jekyll-theme-console

  A jekyll theme inspired by linux consoles for hackers, developers and script kiddies.

  Language:SCSS6881225420

• uw-ipd/RoseTTAFold2NA

  RoseTTAFold2 protein/nucleic acid complex prediction

  Language:Python3221610472

• lithops-cloud/lithops

  A multi-cloud framework for big data analytics and embarrassingly parallel jobs, that provides an universal API for building parallel applications in the cloud ☁️🚀

  Language:Python31714386105

• EddyRivasLab/hmmer

  HMMER: biological sequence analysis using profile HMMs

  Language:C3081227569

• ViennaRNA/ViennaRNA

  The ViennaRNA Package

  Language:C2961922178

• rpetit3/fastq-dl

  Download FASTQ files from SRA or ENA repositories.

  Language:Python27151725

• kevinsblake/NatParksPalettes

  Color palette package inspired by National Parks

  Language:R230244

• linsalrob/ComputationalGenomicsManual

  Robs manual for the computational genomics and bioinformatics class.

  Language:HTML19411157

• rcedgar/muscle

  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

  Language:C++19267222

• globalbioticinteractions/globalbioticinteractions

  Global Biotic Interactions provides access to existing species interaction datasets

  Language:Java1242299217

• IndexThePlanet/Logan

  Logan Unitigs and Contigs

  91593

• rcedgar/usearch12

  Open-source usearch

  Language:C++814119

• aws-samples/aws-batch-architecture-for-alphafold

  Language:Python375311

• viralemergence/virion

  The Global Virome in One Network

  Language:R3710658

• JustineCharon/RdRp-scan

  Exploring the "dusk matter" of the RNA virosphere

  35345

• rcedgar/palmscan

  Language:C++25325

• shoichisakaguchi/NeoRdRp

  Language:Python21303

• ababaian/palmid

  RNA dependent RNA Polymerase Palmprint Analysis

  Language:R103125

• globalbioticinteractions/template-dataset

  Template species interaction data repository compatible with globalbioticinteractions.org

  73622

• rcedgar/palm_annot

  Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences

  Language:Python6232

• jbloom/PRJNA692319_public

  Analysis of Antarctica sequencing samples contaminated with SARS-CoV-2

  Language:Python4212

• rcedgar/jupiter

  Generate "Jupiter" plots for circular genomes

  Language:Python220

• brietaylor/brietaylor

  Profile Readme

  1100

• chengdongqiang/OrViT

  OrViT: (OrthornaVirae Tree) an integrated pipeline for RNA virus taxonomy

  Language:Makefile111

• dgg32/NCBI-taxonomy-in-AWS

  Language:Python1201

• spyros-lytras/anellome

  Online supplementary for the "Diversity and evolution of the human anellome"

  Language:Python10