albertozeni

albertozeni's Stars

• microsoft/AI-For-Beginners

  12 Weeks, 24 Lessons, AI for All!

  Language:Jupyter Notebook35.2k4121166k

• OpenGene/fastp

  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  Language:C++2k51524334

• broadinstitute/gatk

  Official code repository for GATK versions 4 and up

  Language:Java1.7k1544.6k596

• samtools/samtools

  Tools (written in C using htslib) for manipulating next-generation sequencing data

  Language:C1.6k1001.3k580

• lcompilers/lpython

  Python compiler

  Language:C++1.5k341k166

• chhylp123/hifiasm

  Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

  Language:C++5613068888

• nanoporetech/dorado

  Oxford Nanopore's Basecaller

  Language:C++559311.1k68

• leenooks/phpLDAPadmin

  phpLDAPadmin - Web based LDAP administration tool

  Language:PHP55337170171

• 10XGenomics/cellranger

  10x Genomics Single Cell Analysis

  Language:Rust3733522394

• whatshap/whatshap

  Read-based phasing of genomic variants, also called haplotype assembly

  Language:Python3441448340

• lh3/miniprot

  Align proteins to genomes with splicing and frameshift

  Language:C33886218

• HKU-BAL/Clair3

  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

  Language:Python2501130630

• RagnarGrootKoerkamp/astar-pairwise-aligner

  A pairwise sequence aligner written in Rust

  Language:Rust11751711

• ratschlab/metagraph

  Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

  Language:C++115167617

• milakov/int_fastdiv

  Fast integer division with divisor not known at compile time. To be used primarily in CUDA kernels.

  Language:Cuda70719

• lh3/miniwfa

  A reimplementation of the WaveFront Alignment algorithm at low memory

  Language:C49544

• pairwise-alignment/pa-bench

  Benchmarking pairwise aligners

  Language:Jupyter Notebook36481

• asbschmidt/CUDASW4

  CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search

  Language:Cuda35555

• albertozeni/LOGAN

  LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.

  Language:Cuda27564

• necst/grcuda

  Polyglot CUDA integration for the GraalVM

  Language:Java17313

• 10XGenomics/scan-rs

  Single-cell analysis methods in Rust

  Language:Rust15511

• COMBINE-lab/pufferfish2

  Language:Rust15711

• albertozeni/starlight

  Starlight: A Kernel Optimizer for GPU Processing

  Language:C++14303

• hVHDL/hVHDL

  documentation pages for High Level Synthesizable VHDL (hVHDL) libraries

  Language:Python10200

• hal-lab-u-tokyo/CGRAOmp

  OpenMP front-end based on LLVM for CGRAs

  Language:C++8110

• farhat-lab/mtb-illumina-wgs-evaluation

  Repository for analysis of Benchmarking the accuracy of short-read sequencing across the M. tuberculosis genome, 2022, Bioinformatics.

  Language:Jupyter Notebook6400

• 10XGenomics/websummary

  Generate an HTML report in Rust

  Language:Rust520

• albertozeni/ksw2z-fpga

  High-Performance FPGA implementation of the KSW2-z algorithm

  Language:Python2100

• albertozeni/XDropXOHW-Public

  High-Performance FPGA implementation of the X-drop algorithm

  Language:C++2102

• necst/hephaestus

  Codesigning and Automating 3D Image Registration on Reconfigurable Architectures (CODES+ISSS'23)

  Language:Python2800