andreiprodan

andreiprodan's Stars

• astral-sh/uv

  An extremely fast Python package and project manager, written in Rust.

  Language:Rust19.3k373k571

• tj/git-extras

  GIT utilities -- repo summary, repl, changelog population, author commit percentages and more

  Language:Shell17.3k2144161.2k

• newren/git-filter-repo

  Quickly rewrite git repository history (filter-branch replacement)

  Language:Python8.1k51371691

• ossu/bioinformatics

  :microscope: Path to a free self-taught education in Bioinformatics!

  5.3k36224897

• posit-dev/positron

  Positron, a next-generation data science IDE

  Language:TypeScript2.3k212.6k68

• extendr/extendr

  R extension library for rust designed to be familiar to R users.

  Language:Rust4251534942

• ncbi/GeneGPT

  Code and data for GeneGPT.

  Language:Python36818524

• 10XGenomics/cellranger

  10x Genomics Single Cell Analysis

  Language:Rust3483522092

• MarioniLab/miloR

  R package implementation of Milo for testing for differential abundance in KNN graphs

  Language:R333924422

• markfairbanks/tidypolars

  Tidy interface to polars

  Language:Python332912311

• pwwang/datar

  A Grammar of Data Manipulation in python

  Language:Python2651112417

• bioSyntax/bioSyntax

  Syntax highlighting for computational biology

  Language:Shell252175130

• kcleal/gw

  Genome browser and variant annotation

  Language:C++2446187

• eddelbuettel/r2u

  CRAN as Ubuntu Binaries

  Language:R22735816

• extendr/rextendr

  An R package that helps scaffolding extendr-enabled packages or compiling Rust code dynamically

  Language:R182817327

• nf-core/ampliseq

  Amplicon sequencing analysis workflow using DADA2 and QIIME2

  Language:Nextflow178145335112

• askimed/nf-test

  Simple test framework for Nextflow pipelines

  Language:Java135716220

• timoast/sinto

  Tools for single-cell data processing

  Language:Python11726325

• lynnlangit/aws-for-bioinformatics

  AWS for Bioinformatics Researchers

  Language:Jupyter Notebook1147028

• MangiolaLaboratory/sccomp

  Testing differences in cell type proportions from single-cell data.

  Language:R878437

• nf-core/smrnaseq

  A small-RNA sequencing analysis pipeline

  Language:Nextflow72141187122

• fulcrumgenomics/fqtk

  Fast FASTQ sample demultiplexing in Rust.

  Language:Rust5412131

• ncborcherding/Trex

  Using TCR and expression for sequence embedding

  Language:R47591

• Winnie09/Lamian

  Language:HTML434289

• bentsherman/nf-boost

  Experimental features for Nextflow

  Language:Groovy25610

• JSB-UCLA/scReadSim

  A single cell sequencing read simulator.

  Language:Python23184

• ScaleBio/ScaleRna

  ScaleBio Single-cell RNA Nextflow Workflow

  Language:Python173

• ncborcherding/immApex

  Tools for immune receptor sequence-based neural networks

  Language:R80

• didrikolofsson/rmappet

  Nextflow pipeline for performing parallel alternative splicing analysis using rMATS and Whippet and then overlapping the results.

  Language:Nextflow44

• CostaLab/sigurd

  Using single cell genotype data, the cells are annotated and analysed.

  Language:R3200