andreiprodan's Stars
astral-sh/uv
An extremely fast Python package and project manager, written in Rust.
tj/git-extras
GIT utilities -- repo summary, repl, changelog population, author commit percentages and more
newren/git-filter-repo
Quickly rewrite git repository history (filter-branch replacement)
ossu/bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
posit-dev/positron
Positron, a next-generation data science IDE
extendr/extendr
R extension library for rust designed to be familiar to R users.
ncbi/GeneGPT
Code and data for GeneGPT.
10XGenomics/cellranger
10x Genomics Single Cell Analysis
MarioniLab/miloR
R package implementation of Milo for testing for differential abundance in KNN graphs
markfairbanks/tidypolars
Tidy interface to polars
pwwang/datar
A Grammar of Data Manipulation in python
bioSyntax/bioSyntax
Syntax highlighting for computational biology
kcleal/gw
Genome browser and variant annotation
eddelbuettel/r2u
CRAN as Ubuntu Binaries
extendr/rextendr
An R package that helps scaffolding extendr-enabled packages or compiling Rust code dynamically
nf-core/ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
askimed/nf-test
Simple test framework for Nextflow pipelines
timoast/sinto
Tools for single-cell data processing
lynnlangit/aws-for-bioinformatics
AWS for Bioinformatics Researchers
MangiolaLaboratory/sccomp
Testing differences in cell type proportions from single-cell data.
nf-core/smrnaseq
A small-RNA sequencing analysis pipeline
fulcrumgenomics/fqtk
Fast FASTQ sample demultiplexing in Rust.
ncborcherding/Trex
Using TCR and expression for sequence embedding
Winnie09/Lamian
bentsherman/nf-boost
Experimental features for Nextflow
JSB-UCLA/scReadSim
A single cell sequencing read simulator.
ScaleBio/ScaleRna
ScaleBio Single-cell RNA Nextflow Workflow
ncborcherding/immApex
Tools for immune receptor sequence-based neural networks
didrikolofsson/rmappet
Nextflow pipeline for performing parallel alternative splicing analysis using rMATS and Whippet and then overlapping the results.
CostaLab/sigurd
Using single cell genotype data, the cells are annotated and analysed.