biocore-ntnu/epic2

Issues

• Build failure with Htslib 1.20

  #77 opened 4 months ago by martin-g
  3

• EPIC2 can't use

  #75 opened 6 months ago by anyang-kevin
  5

• Keeping low number of duplicates

  #76 opened 5 months ago by phoebe460
  3

• Custom genome use isn't clear

  #73 opened a year ago by c-guzman
  3

• Int overflow when parsing ChIP files.

  #74 opened 10 months ago by vidal-adrien
  3

• epic2 with bedpe input issue

  #61 opened 2 years ago by yussufhajjaj
  15

• epic2-df ValueError

  #72 opened a year ago by PeterHHer
  0

• epic2 installed but not working

  #71 opened a year ago by ltosti
  0

• Problem running epic2-df

  #70 opened a year ago by Holmes815
  1

• epic2 does not work for custom genome

  #69 opened a year ago by Turckie
  2

• epic2-bw KeyError: 'required_flag' , doesn't appear in arg parser

  #68 opened 2 years ago by a-lahat
  2

• Error handling -1 positions in BEDPE files

  #67 opened 2 years ago by bu-bgregor
  1

• Install error

  #66 opened 2 years ago by hiroyukikato911
  0

• Can epic2-df support biological replicates?

  #65 opened 2 years ago by hdshu
  1

• epic2 vs sicer2 1.0.3

  #64 opened 2 years ago by darked89
  0

• Blacklist region handling

  #63 opened 2 years ago by sitr1014
  1

• Epic2 running error caused by chromosome names in my alignment file

  #62 opened 2 years ago by sitr1014
  1

• Very different results of epic2 vs macs2

  #58 opened 2 years ago by kikegoni
  1

• how to use custom genome i.e. E. Coli in epic2 ?

  #59 opened 2 years ago by Ankana001
  1

• built-in genome list

  #60 opened 2 years ago by nermah1
  1

• Error running epic2 v0.0.52

  #57 opened 3 years ago by benayang
  6

• is v0.0.52 available on bioconda?

  #56 opened 3 years ago by tingliu-uhn
  3

• Are output coordinates one or zero-based?

  #55 opened 3 years ago by rauldiul
  3

• ValueError: need more than 0 values to unpack

  #54 opened 3 years ago by chenchen-eng
  1

• Epic2 with no input

  #44 opened 4 years ago by nservant
  8

• epic2 Failed to install on Mac

  #53 opened 3 years ago by jjp55
  7

• `epic2-bw` failed with KeyError: 'guess_bampe'

  #52 opened 3 years ago by xie186
  4

• median fragment size

  #49 opened 4 years ago by tan5251
  2

• Bedpe

  #50 opened 4 years ago by tan5251
  1

• Library not loaded - Reason Image not found error

  #51 opened 3 years ago by sufyazi
  2

• gap size

  #48 opened 4 years ago by tan5251
  2

• effective genome size

  #47 opened 4 years ago by tan5251
  2

• SyntaxError in epic2-0.0.47

  #45 opened 4 years ago by dconnolly1
  3

• `guess_bampe` missing for `epic2-df`

  #46 opened 4 years ago by mzytnicki
  7

• error when running epic2-df example

  #42 opened 4 years ago by smartgamer
  19

• epic2 running for ages without throwing any error

  #43 opened 4 years ago by Bio-finder
  2

• bam paired-end support not yet available for epic2 in current conda installation

  #41 opened 4 years ago by daveiles
  3

• Missing --guess-bampe argument

  #40 opened 4 years ago by KunFang93
  7

• epic2 installed but not working

  #39 opened 4 years ago by pb016
  2

• epic2 ran as normal but didn't return outputs

  #37 opened 4 years ago by dcheng1
  6

• OverflowError reads_to_bins

  #36 opened 4 years ago by friederhadlich
  24

• Unexpected behavior keep-duplicates 0.0.41

  #34 opened 4 years ago by mpaya
  5

• missing large domains

  #35 opened 5 years ago by runningvato
  8

• Start positions all end in 00

  #33 opened 5 years ago by melemieux
  2

• "Exception: Not valid subsetter: 1" while using epic2-df

  #32 opened 5 years ago by wesleylcai
  16

• epic2 run error - Expected 72 from C header, got 88 from PyObject

  #31 opened 5 years ago by mbassalbioinformatics
  4

• "failed building wheel for epic2" error during pip install

  #30 opened 5 years ago by sufyazi
  11

• bedpe input not processed correctly

  #29 opened 5 years ago by ptrebert
  17

• how to discard more than one chromosomes with parameter -d

  #28 opened 5 years ago by ShuangHe33
  4

• Linux install error

  #27 opened 5 years ago by radio1988
  2