biocore/unifrac

Issues

• Test failures on unifrac 1.3 release

  #158 opened a year ago by nileshpatra
  7

• test_faith_pd_none_observed fails: type numpy.ndarray doesn't define __round__ method

  #156 opened a year ago by nteodosio
  4

• FAIL: test_unweighted_minimal_trees (tests.test_api.EdgeCasesTests.test_unweighted_minimal_trees)

  #157 opened a year ago by vpa1977
  2

• pip install instructions are wrong

  #154 opened 2 years ago by wasade
  0

• Where can I find Python3 module BP

  #145 opened 2 years ago by tillea
  1

• Gracefully handle NaN edges

  #143 opened 3 years ago by wasade
  0

• your package in Rstudio?

  #137 opened 3 years ago by marwa38
  1

• Can't install UniFrac from bioconda

  #114 opened 3 years ago by jmol0917
  4

• Quantitative variant of Faith's PD

  #67 opened 3 years ago by gwarmstrong
  1

• fix code resulting in compiler warnings

  #88 opened 3 years ago by gwarmstrong
  1

• Length multiplication for weighted metrics can be migrated higher in the stack

  #57 opened 3 years ago by wasade
  1

• merge_partial on large tables has segfault on destroy

  #54 opened 3 years ago by wasade
  1

• autoconf

  #41 opened 3 years ago by wasade
  0

• -fprofile-generate and -fprofile-use

  #44 opened 3 years ago by wasade
  0

• Where can I find the code for sucpp in unifrac version 1.0.0

  #141 opened 3 years ago by tillea
  7

• Validate input tree

  #35 opened 7 years ago by ElDeveloper
  3

• adonis() on Bray-Curtis distance for any ordination?

  #140 opened 3 years ago by marwa38
  1

• Sensitivity to whitespace

  #138 opened 3 years ago by wasade
  0

• Is there interest in incorporating KNN?

  #135 opened 3 years ago by mortonjt
  12

• Specifying an alpha for generalized with meta unifrac errors incorrectly

  #117 opened 4 years ago by wasade
  0

• skbio.stats.distance._base.DistanceMatrixError: Data must be symmetric and cannot contain NaNs

  #116 opened 4 years ago by nick-youngblut
  8

• _validate() called only on unweighted unifrac

  #105 opened 5 years ago by ChrisKeefe
  2

• Broken Rcpp install in travis build

  #101 opened 5 years ago by gwarmstrong
  0

• change `qiime diversity beta-phylogenetic-alt` to `qiime diversity beta-phylogenetic` in README

  #97 opened 5 years ago by gwarmstrong
  0

• include instructions for bioconda install in README

  #96 opened 5 years ago by gwarmstrong
  0

• Create conda-forge package

  #62 opened 5 years ago by ElDeveloper
  3

• update version string and new release

  #94 opened 5 years ago by gwarmstrong
  0

• R tests are not being executed in the Travis build

  #77 opened 6 years ago by ElDeveloper
  1

• test CI with newer versions of `hdf5` and `h5py`

  #78 opened 6 years ago by gwarmstrong
  0

• segmentation fault can occur while running ./test_su

  #91 opened 6 years ago by gwarmstrong
  3

• table is empty should raise `ValueError` not `IOError`

  #90 opened 6 years ago by gwarmstrong
  2

• Stochastic (?) SSU Segfault

  #63 opened 6 years ago by thermokarst
  6

• `test.dm` in the root directory

  #59 opened 6 years ago by ElDeveloper
  2

• reformat citation in README

  #82 opened 6 years ago by gwarmstrong
  0

• `stacked_faith` should be renamed to be `faith_pd` to keep the algorithm separate from the implementation

  #81 opened 6 years ago by gwarmstrong
  0

• Include Faith's PD in README

  #76 opened 6 years ago by gwarmstrong
  0

• CLI interface for Faith PD

  #66 opened 6 years ago by gwarmstrong
  4

• Compute status messages off in `su.cpp`

  #69 opened 6 years ago by gwarmstrong
  0

• Enable OSX testing in Travis

  #31 opened 6 years ago by ElDeveloper
  2

• Faith's PD result Series is missing a name

  #71 opened 6 years ago by wasade
  1

• Validate input table

  #34 opened 7 years ago by ElDeveloper
  0

• API examples

  #40 opened 7 years ago by wasade
  0

• 100k sample run

  #42 opened 7 years ago by wasade
  0

• Expected memory requirement

  #56 opened 7 years ago by sjanssen2
  3

• capi_test failing due to changes in api

  #53 opened 7 years ago by nreeve17
  0

• BUG: root evaluation

  #46 opened 7 years ago by wasade
  0

• Add samples to a distance matrix

  #45 opened 7 years ago by wasade
  0

• Small trees/tables fail

  #37 opened 7 years ago by ElDeveloper
  0

• Trees with less than 4 tips return nan

  #36 opened 7 years ago by ElDeveloper
  0

• Should UniFrac ever return NaN?

  #33 opened 7 years ago by ElDeveloper
  0