bjclavijo

bjclavijo's Stars

• pybind/pybind11

  Seamless operability between C++11 and Python

  Language:C++16.2k2492.1k2.1k

• greg7mdp/sparsepp

  A fast, memory efficient hash map for C++

  Language:C++1.3k6578125

• ismayc/thesisdown

  An updated R Markdown thesis template using the bookdown package

  Language:TeX81227120359

• yihui/hugo-xmin

  eXtremely Minimal Hugo theme: about 140 lines of code in total, including HTML and CSS (with no dependencies)

  Language:HTML7911346364

• mummer4/mummer

  Mummer alignment tool

  Language:C++48321206110

• marbl/verkko

  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

  Language:Python3191830730

• mateidavid/zstr

  A C++ header-only ZLib wrapper

  Language:C++308182772

• dzerbino/velvet

  Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18: 821-829

  Language:C2852937101

• TGAC/KAT

  The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.

  Language:C++2132516351

• waveygang/wfmash

  base-accurate DNA sequence alignments using WFA and mashmap3

  Language:C++18296721

• cytoflow/cytoflow

  A Python toolbox for quantitative, reproducible flow cytometry analysis

  Language:Python1781333953

• lh3/kmer-cnt

  Code examples of fast and simple k-mer counters for tutorial purposes

  Language:C++16710915

• command-line-bootcamp/cli-boot.camp

  :computer: command-line bootcamp adventure in your browser

  Language:JavaScript102103451

• xxsds/sdsl-lite

  Succinct Data Structure Library 3.0

  Language:C++94133318

• cjlee112/pygr

  Python graph database framework for bioinformatics

  Language:Python936335

• jermp/sshash

  A compressed, associative, exact, and weighted dictionary for k-mers.

  Language:C++8452218

• kamimrcht/REINDEER

  REINDEER REad Index for abuNDancE quERy

  Language:C++577276

• cartoonist/kseqpp

  Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)

  Language:C++472108

• ekg/mmmulti

  memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort

  Language:C++27527

• TonyBolger/LOGAN

  Language:C2520