botond-sipos's Stars
go-delve/delve
Delve is a debugger for the Go programming language.
crossbeam-rs/crossbeam
Tools for concurrent programming in Rust
traefik/yaegi
Yaegi is Another Elegant Go Interpreter
pytorch/ignite
High-level library to help with training and evaluating neural networks in PyTorch flexibly and transparently.
DataBiosphere/toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
igvteam/igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
biod/sambamba
Tools for working with SAM/BAM data
Martinsos/edlib
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
ACEnglish/truvari
Structural variant toolkit for VCFs
kcleal/gw
Genome browser and variant annotation
shenwei356/brename
A practical cross-platform command-line tool for safely batch renaming files/directories via regular expression
schatzlab/genomescope
Fast genome analysis from unassembled short reads
adamewing/bamsurgeon
tools for adding mutations to existing .bam files, used for testing mutation callers
pmelsted/bifrost
Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
Dfam-consortium/RepeatModeler
De-Novo Repeat Discovery Tool
lh3/psmc
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
ablab/IsoQuant
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
hasindu2008/f5c
Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)
informationsea/transanno
accurate LiftOver tool for new genome assemblies
WGLab/NanoCaller
Variant calling tool for long-read sequencing data
ogotoh/spaln
Genome mapping and spliced alignment of cDNA or amino acid sequences
datavzrd/datavzrd
A tool to create visual HTML reports from collections of CSV/TSV tables
quinlan-lab/bedder-rs
an API for intersections of genomic data
paoloshasta/shasta
De novo assembly from Oxford Nanopore reads.
10XGenomics/rust-debruijn
De Bruijn graphs in Rust
univieCUBE/gepard
Genome Pair Rapid Dotter
jguhlin/minimap2-rs
Rust bindings to minimap2 library
fitzgen/histo
Histograms with a configurable number of buckets, and a terminal-friendly Display.
rchikhi/rust-parallelfastx
Parallel iteration of FASTA/FASTQ files, for when sequence order doesn't matter but speed does
holtgrewe/mason3
Mason read simulator version 3 (with 100% more emojis and Rust)