cemordaunt
Computational Biologist at GSK. Interested in target identification, epigenomics, and bioinformatics.
GSKPhiladelphia, PA
cemordaunt's Stars
sqlitebrowser/sqlitebrowser
Official home of the DB Browser for SQLite (DB4S) project. Previously known as "SQLite Database Browser" and "Database Browser for SQLite". Website at:
OpenMathLib/OpenBLAS
OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
thomasp85/patchwork
The Composer of ggplots
rstudio/gt
Easily generate information-rich, publication-quality tables from R
theislab/single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
thomasp85/ggforce
Accelerating ggplot2
YinLiLin/CMplot
📊 Circular and Rectangular Manhattan Plot
vcftools/vcftools
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
brentp/cyvcf2
cython + htslib == fast VCF and BCF processing
vqv/ggbiplot
A biplot based on ggplot2
NBISweden/excelerate-scRNAseq
Single RNA-seq data analysis with R (Finland, May, 2019)
vanheeringen-lab/gimmemotifs
Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.
kdkorthauer/dmrseq
R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
ben-laufer/DMRichR
A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
hansenlab/bsseq
Devel repository for bsseq
ben-laufer/CpG_Me
A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
stephaniehicks/methylCC
R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
kdkorthauer/repressivecapacity
Reanalysis of the repressive capacity of promoter DNA methylation
markrobinsonuzh/DAMEfinder
Finds DAMEs - Differential Allelicly MEthylated regions
hansenlab/BrainEpigenomeNN
Scripts used for analysis of data in paper, 'Neuronal brain region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric disease heritability'.
dsidavis/RBeyondBasics
Material for workshop on beyond basics in R
ucdavisdatalab/workshop_intro_to_sql_fork
liupeng2117/MethylSeqDesign
MethylSeqDesign is a framework for power calculation and study design of Methy-Seq experiments by utilizing information from pilot data.
markrobinsonuzh/allele_specificity_paper
Analysis of allele-specific methylation (and changes in it)
aciernia/CerebralCortex2019
Analysis code associated with Vogel Ciernia et al. Cerebral Cortex 2019.